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Mouse element [ mm97 ]


Position: chr3:100,241,120-100,244,013 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 4930406D18Rik - Fam46c

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAtgAAAGAACATCCCATGCCTGTatgtctgcttgaaagagtggctcacagcaacccgga
gcagccaatggaggatctcattggatagacttgtccaatgctggttctgcagctcattta
tgtcccagaagacatcctcctacacttgccacacatccctgggtaatgtgtgtccactcc
ttccagaaagttctttccaagttcttggcgtgtctgacaggaaagggattcttacctgta
caagtcaactctccctctacccttgtcactagaactacccaagaccagactgtatatact
aggagttaagtccaattgagatttatatcctttctccaggaacctgctgctggctgggac
tcatcactgctccttcgcatggaatgctccgaggacagaagcccagctgagagctagtta
tgccttcctaatttatggtgggtcacagagggaatgaggctagcattcctaagtctccct
gtgccaagtgacaagcactggcctcacgtgtggcatctcaatactaaccaatccctgtga
cacgggaagaaatcttcatttccactgtgcattttttgttgtgactgtttagttggttaa
ttggtttttgcttgtttgttggtttgtttgtttgtttgcagtgctgggaaggagacacgg
ggcctcatacaagtgttctcccatagacctatgtcttcagctcttatctcccaatataat
cagaaaactgagactccaataattaaatcccctttcgaggctctacagcttgccacccat
ctccagtgacgtggatcgttttgactctgaagacagcctcctcacccacccctggaaagc
ttctagaatttgtaactgagtatattcatgtcacgaatcttctcttccagagagagaaat
gtgttactaagtagaaactaactaacacatttcttttcaagtcctgtgttcttggtatat
gtaaatttttacatgcaaaccatggcagatggtcagagaccagaatcaaaggtgtgaaag
tgtatgtgtttgtgtgtgtgtgtacccacacatagacattgaatataagcatgtgtgctg
tggtcctatccacacaaacatgaatgtgtatcaacagatccatataaacatatctcaaca
ggctagaactgtttatgtcactcttcagagaaaaacaaaacccagagttcccggttttgt
tttcaagatcacctcccaggacccataaatgctgtgacttgctacattaacgcctgtgtt
ttcaaaacattctgttaaccatgtgaaatgcatgaagtagcaacttctgagcttggaggg
gccaatcagaaggctgcatgatggaagacttacccaagtgagcagtaactgagagtaact
aagatctgcaccagttggcttctcggaacacccttatctagactctgcatgtgtcaggct
tgggaaaccagacccacactgtgaagtctgggcatgacctagcagattgggggtgagagg
aggttaccttctgcagtcctgatctgagctttctgaaactaccagtggtcagcaggaccc
agaggtacttaacttactgttagaaaaatcatttaagttcttctccaccagtgcacccac
gtcatgaggagaaaactcaaggcctagggtaagaagcacacacccagaggcaagtgaggt
ctgttgaacagctgggagaactgccagctatcaactgatccaagatatctgcgaaggact
aagcaagactcagccaggagcagacgagatacactggctttagacttctgactccccata
acatgactgtttttgctgtcctctacctcagcagaaagaggtaccttatgtctgtcccca
gacctgccacataccatgctccagaacccagtccccagctccctgctgtcgaagagacac
tattcaaacagctactgcctgtaaaaggcacctaccccatgcttcctgttgtaccaaata
ataaaatttccagggctaccataaaaggcaactgcctctttccctaagggcacgtgagac
tgcagttgctgtcagcagatgaaattttgcccaccagatgcggactaggtagtgacctca
ttgcacatgtgggtctgggtgacagggacacaccatgacttggagacactgtaagttggt
ggcatttgccaacagctgaccacagacaccacaactggccttcctaagaaccagaggtag
cctaaagaactctagttcagtaaagtcccctagcctccagcagcccttggaggggactag
cattgcccccaggggagcctatgtactctgctggaagtgagtttgtgctcaggtttcgat
gatgagtcgagcaaacaaggcatgaacccaaagttcccagggctctgaacaatcataact
ctcgggaggagacaaacacctgcagggtcagtggactcctactttcctccaacagtggcc
tgggctacctgtgtactgggactgtgaaaaagactcccttcatgctacagagggatttag
ataagcaggtatgctcagcacaggtctgctttacactggcaagaggcgccctcaaggtca
gactccctcttcttatcaggaccctttgtcccttcctcagggtcccttgtcattctagac
tgtaggctggtgccatccggcctcccacatctttcctcccacactctcagacgcaagccc
accctctctagcctcactctaggaatgacatgatttcagtgaccttgtctagtagcttcc
aacccttggaagagtttggaagctttctcacccactcccacctcctgccaggatatttct
acaccggggaacaggtagcctccagcagagtcttcaattcctccctaggctgtaTATTCT
AGGGCTCAAGGGCA
Primer
(+)CACCAAAGAACATCCCATGCCTGT
(+)TGCCCTTGAGCCCTAGAATA


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