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Mouse element [ mm963 ]


Position: chr17:25,312,044-25,313,077 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ccdc154 - BC003965

Timepoints:
e12.5

Reproducible staining in gastrointestine. Published in: Noncoding deletions reveal a gene that is critical for intestinal function. Oz-Levi D, Olender T, Bar-Joseph I, Zhu Y, Marek-Yagel D, Barozzi I, Osterwalder M, Alkelai A, Ruzzo EK, Han Y, Vos ESM, Reznik-Wolf H, Hartman C, Shamir R, Weiss B, Shapiro R, Pode-Shakked B, Tatarskyy P, Milgrom R, Schvimer M, Barshack I, Imai DM, Coleman-Derr D, Dickel DE, Nord AS, Afzal V, van Bueren KL, Barnes RM, Black BL, Mayhew CN, Kuhar MF, Pitstick A, Tekman M, Stanescu HC, Wells JM, Kleta R, de Laat W, Goldstein DB, Pras E, Visel A, Lancet D, Anikster Y, Pennacchio LA. Nature. 2019 Jul;571(7763):107-111. doi: 10.1038/s41586-019-1312-2. Epub 2019 Jun 19. PMID: 31217582

Expression Pattern
other (5 out of 8 embryos) 

Embryo 1


Embryo 3


Embryo 5


Embryo 8


Fasta sequence
GGAAGGGGAGAGCAGGTATCcaacaaggcatatcagaatacaatctctatctgagagacc
tgggtgtgagaagccccttagatctgctcagggtcaaacttcccagcccctctctgctat
cctgaaaccctgagtttgggaagtactgggctggctacttcgatgtcctacattgctgga
tcctctgtctcaggaggtgtccagcattcctgatactagtctttgagggtgactgctagt
ggagagtttaatgcagatatatttccagtgggagggacccccccaacccccagtggtgtg
accaccccagaagactccagcattcacacaggctcctacctgagactgcagagctcactc
agcaggcccacctccacctggggcgcaagcatttatagctgggctccacaactgcctgag
gctggcaaatatttggcaacggcattgtcatcgcagactgggcaaacagagcccgtttgt
tttagcgcccagcaaccagagccctgcggggggagtacccaaagactgcctcacctgcac
gcagcctgccgggggaacatggagtgtttgcctcaggcccagctggtccacaccctggac
ccgaggacccttatctatactgctgattggggccccatccaagctgtgtcaaataggcag
aaaattaaatttcatgctattttgagttctggagtacacctctccagaggacatcctgcc
tgcagtgcatgctataaaccatgctctgcagcaacaggacctggagaaaggggggactgg
ggctatgcaacctctcactagatccaggatgggagctaatatgtgcagtccttgtaaccc
cttccaagcccctccaccctctgggcctttgttcagctaagattaaccatgaccctgtca
accagcccagtaaggactttgagaaggactctcatgtggtggctgccatccacttgccca
gaaacccagctgtacttgtcatcagcctgattgaaccaaccgctgagcatcCTTGGTGGG
GTGAAGACAAGGTa
Primer
(+)GGAAGGGGAGAGCAGGTATC
(+)cacCTTGTCTTCACCCCACCAAG


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