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Mouse element [ mm939 ]


Position: chr13:48,661,327-48,662,432 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Mirlet7a-1 - Ptpdc1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTGTGGATGGCTCTTAGAAatgtgtcaccagaatgaccctctggctctgttttcctgtg
gagggacagagaattatttggtcttctcagaacaaaggagcaaaagagctcacgtttaat
ggtcctgtgtccagaaagccagtcccttctgccaggtgagcacatgtggtctcctgtggc
cttctcaatcttcacaggattggctcggaatgtcctatagaaaagagccgttctgcctgg
ggctgctgtctgttcccagtgtgtgtgtgcccctccttcggtatgggctgctcaagggtc
cctaacctagaggggggttgggaggactccagagtgtttctagtcaggcctgaatgaagg
ccgggctattgtgttcagacctctaacttcgtttctgacaaagggccttctaaagcagca
tttttcattagcccaaaggtttattttgcaggcagcttttcgccatgactcagtttctgg
cccacagccaggaggccttgtgtcagaattcctgcagaggaggcctccgggccttggcct
gacctccctcccagccccgcggaagactgtaccctttcctaaccgaggttagggaaccgg
cattcttgtgccttcaaatttaaatgatgtcaacattttaaatcactgacccaaagaaga
aaataaaaaattatgtggctatcacagctatatctcctccgtgtgttttaaatatagaaa
gcaggaagccaaacatctggcaagcgagactgtgtgctgaatgtgtggtggccaggaaaa
ccaagaagaagaagaagaaaaaaagcatcagtcagagtctagaaaaatgatggtttactc
ttactgagtaatatttagagacagggactgaggaaggatggaaggcagctgttacaacac
agattgggttgttttttttttttccccaaatccaatccttcagaaattctcaagaaaagg
aaaacttaagaaataaatttcaatttattcaaagacattttagagtataaagtaaaatag
cctaggtctcctattttaaaaatacagcaaatcgctgaagttcattggggatccacaatC
AGGTACTAGAATTCAGTTAGAAGGTc
Primer
(+)AGTGTGGATGGCTCTTAGAA
(+)caCCTTCTAACTGAATTCTAGTACCTG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.