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Mouse element [ mm930 ]


Position: chr3:128,221,691-128,224,234 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: D030025E07Rik - Pitx2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCGGTTTAGAAGAGGTGTTTcttaaaccctttgttttttctcatcatttcaccgcctctg
attgtcctcatctaccctgcagatagtcggtggctgaaggaggagtattgtttgattcac
aggctgtaattcttattaaagcaagtgcaagtttggttatggcacattgctttgaaagca
gttgagatggtggaggacaatgagagggtgtgtgtaaaagaaacaactggttcatattct
gggaatgctgccagcatttggttctaaaccagaacaagtgctggctgtcagatgaatctg
tgcttaaaataaaagaaggctcctaagagcctagattagcagaaagaagcaatgatcaaa
cgctggactcttgctacaagggcttgaaaatggtgggtgctatctctgcgatcctgtatg
agtttaaaaacagtggcagataatttagttgatacagttagctatgattctcatctccca
actatcagatgaaatgattaagggtatttatgaacatcatgaatctgtgaaagccaaaca
tcacttcaaatatgattacgataatatacgtatgaataaagctcaggaccagtttccaaa
ccatctcttatgtttccccattatatgtgaaattaatgacttgctgatagacaataacct
cttcacattttgttagaacctcattaattttcatagttgagatttagactcatgagctga
gctcaagtcccattgtatattctttagtaagaaatcaggccactaaacaaattaagctta
ccaaaagaaatctgtaaagggaataattcattaacacagaaaagtcccacctatcagata
attaatatagtaggtatgtatgatcaatataactgcaaatcatgatataggaacatcaga
atggaaaaaaacagaatatatttgttaccaaacattcagaataacttgttattaagtaca
tatgcttcaaattagatatttaaaagtagtatataaatctctatttcagatagtcttgcc
tacatagtcacagagaaattttactgtatgtgtgattgtgtagtactcgatttcataggc
ttttggtggtagagagaagaaaccaccttcaagattttattaccaaagaaagcactgaga
accaatgcttcttattctgcagggacatattcagtgattcatgtcttcactgattcaaac
tagcttgtgggtgggtgggaaatcccacacaactcagccatcacaaagttgaccaagatg
gagaatggctttgtactgctctgctttaaataaatacagataattaaatcaaccttcgca
gcagtagaataaagtatacatccaaactttacccagccgaaggctgccttggccaccagc
cagaagccagagggccagggctaatttgcataaaattgaacagattgccgcagctgctgt
ccttattaatacccacgcgtaatcataatcagaaggcattccacccacagcacggccacc
tccagcacactgccacccattgctttgcaggacctattgctgctgctgcgtgaccctgtt
ttgagcagaaagatgactggaaaaaaaaaaaggaaagaaagaaaaaaaaaacttttcaat
ttactgcagaatagccgtttagccatttagccgtttctcctaccaagcgtcatgtcccta
tcattctgaaacgttgcaaatccttccgtacactgccacttcttggtaaaaaatcagtta
gtggagattaacaacgccattgatttcaaattctcttcacgggaattatggtgaactctt
cacaacttcaattatttttacgtgtctgcaaagtattatttatgacgcgatgacggctac
cagttgctgatgatgtcatccttggcgttttgcatcctgtcaccctgattccaaccctag
gaaactcgacagagcagtgaaatgcagaagatgtcagagagcatgtgctatgacttatca
cgcctggaacatgctgagaacacagacactatgtaatggctgatagagtgctctcgcatc
agcgtatcaacagcttgctctttgtcggtagtgctaagtgaattggaagattgctgttct
acagtttctcagtcagaagggctgtcagcagcttcatgcaggccagctggggaaaacaaa
ctcttggcccacggaaagatgacgtaacatacaaggagcactggcaaggatggagtggat
tatattaaaaacctatcatatttgttagctaactgtggatgacagcattggagtgtacaa
taaaaagcttttatgatgctctgaaaatccccagtttaccacatgggaatacatcttgag
ctcatctgctggtctggaacacagtaaaagcatagtgttgttcttttttgatcatagaat
atgcattaatataccagaaggcacaatatgtgaccatgtagcacctaattttgaggtaaa
gtttaatatgggggtatgcctgttccctgatccctattattaagcattatatattcatca
cCACATACATGATTCCCAGTGcac
Primer
(+)TCGGTTTAGAAGAGGTGTTT
(+)cacCACTGGGAATCATGTATGTG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.