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Mouse element [ mm88 ]


Position: chr1:59,009,748-59,013,257 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Trak2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tcatTTCTGGGGAACAGGAAACACagtccagagtcccaactctcagaactgaactctggg
acacaccgacagcacctcctttagctgcacagttctgtgttctccctgtggcactgtctt
tgtatggtggctctttatttaatctttttagaaacaactgcgtttttcctacaagctacc
aagtcaagcatgacacatttaacaagaaacagacctctgtaaaccacgcacatttaggag
aaaatcaagtaaaacaaccaactaaattgtttaaagaaggacgggactcaaaatgaacca
ccaaaacatgtcactatcattgctgggagaacacattatgactaagaactgagttagctc
agccacagaattcaatggtcgacagagagagcctaaatataggcactgtgcttaaaaaaa
caggtagatacttccttaaaacaggatactttggacaaaacagccccatgaaaaagacta
gaaactcaggaaaatccaccttatgagaaggcagagcctggaattatagcaaatgcagat
ttaataaagcatattaaaatatatctcaaattgtatttacaaacaatactttggggatta
attagaaactcatgttggctgctaagttgtatgtaagagtgggagcaatgccaatcactg
acctgcaacagctcctcaggcagaggtaaaccaagctggaccacagtaagcttttaaaaa
tgaaataaatttatcttacttctatataaaataactaacttttgaccaagactaactggt
tataccatagctggccatactttgggcaaatctaccaaaacttcacaggaattataggac
cacaccagaattgtcatgactttagtgctataaaggcatggggagtgtcaacccccaaat
cgaaggggaccagtgagcagaagacatcttgaaggtggagaacacatagtgcacccagca
gtgaggtagcagcgaatgggctacgcccagcacagctgttctagcagctatctgtccgtg
ttcctgtttcctactttcaatttagcggccagtagtgttttcataatatgacatataagg
aagccgcttctgattatagacagagtggaccccaaaggctgttgaatctatgacttaagc
atcccaaaccatgaataagattcaggcttcctacaggatatattttgggcttatttgtct
gctaacatcaacatctgttgaggtaggtaactcctcccttccacaatctccaccaccaga
agggaggtaacctctggcaaggaaggagtccacagcagagcgtcacctggagataagaaa
ggcttgagcccagggcaccgtctgcagttctgataagtttccacagatgccctctgtcat
cccctatgtacacttagcctttaagctcttacatcctaagcttgacccgaatcaccctct
gaggaggcaattgctgtttggagtggtcctctgcccataccacatcagatcattctgttt
cttcacccctggctgctgaccattaatggcagaggcctctatcttcaatcgccacagaac
tgtccttcattaccatctctattatgtacaacgtgtgtgaactgatattttaattttgta
tgctagtcctacatgaatccatgaatctgttattgccactgcttttaaggtaaagggaaa
cttgtaatatttgtatactttttgaaacatggtcttgtgtagctcaggctggttttaaac
ttgctctatagctgaggatgatcctggatttctgatcctcctgcttccagctctggaacg
aagggatgagactcatgccaccctgcctaattcactcagcgctggggttgcccccctgcc
tttcttcatacacgcccatcaagcactatacaaagcaacttcactcaaaacccagttaca
agttgtaaggagagtctgcgcttcagaagatttgtaagaaagttaatctacaaggccagg
acaagactttctgtcctgcccactgcagcatgtaaggggttactgcttgtcatacagtta
agaaatttggagaagtttggcctggtaattcctaaacaaagatatgcgcattatctgtag
ttttgaagctgtccagctcaactacccaagtagcaatggatactgtttctctgtgttttg
ttcaacaaatgaaatgggaagaaaataggagagtgctgataagtatctgtgattcaagac
cttcgaatgactccatgattccgtcctaaatacagttgaaaggtctaaaaagcaacaatg
aggcaggctttgcaggcaaggcacatgagctgctcactcacagaaaacaagctctctatg
gtcactttcatgtccacgaggggaaaccccaaagcaaagggctattatgaacttttcctc
caaaaggcagtgtggtccctactcttgaaaattcaaattccaggtgtgttaagcactaaa
tattgcatttaatagagattactactaccattggattttattttttatactatgaactct
taatactataaaagccaagcatgttaatgcatgcacatattgatattcaaagttgaaagt
gagaaacattaagtacagtccctcttttaccagctaagccatctcctggcccaattaggt
tttaaaaaaatatagtataaatttaagtactcaggaggtagaaacataaattggaaacaa
accattcctggcacctggttgtctggacgaagaagatgcataactcagagcagcgtctct
ccatctaccctgctaagagcccttctcaaatgcacaccccttttacagtagactgctatg
cagtctctgcagctgccactagccatgatgtaggggctcaaagaagaaccacacggctct
gtaactagtgctctaaaagagcttcttatacaaaattttttccaccacacaatccagact
ggtgcagccattcaaagactatcaggagtgacttggcaaccttacagcaagagcttctgc
ccctaggtttattatctactccaaagaactgtgatgtcacctacatagagacatggctgg
aggttgtttcccgtagcactgttgatgacaggaaggcaaagcctactcttcaaagtgcag
gtaaaatggggtagagatacactgtagggcaacatgcaccagaatcaaatgctaactgaa
taaagcaacaatcaattccacttatatgcgtgaaatattttccacatttaatttgcacac
ttagtatgtatagacatattgaaatgtttacctttaatgtgaggaagatggaactttgat
ggtataagcttaatataagtttaaaaaagaagtattaaaaacccataaactgtttaaagc
ccactgctcttttatcagtgagccatataattactgttacacccttccgttcttaggcta
agcttgttcctggacacaccaacatgcacacacagttctgcaatgggaactctgtggcac
acttcctggcACATTTCTCAAAACGCCACC
Primer
(+)CACCTTCTGGGGAACAGGAAACAC
(+)GGTGGCGTTTTGAGAAATGT


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