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Mouse element [ mm870 ]


Position: chr9:47,086,595-47,090,797 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm4791 - Cadm1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAtCTATGGGTCCTGGAAGCTGAttacacctcagactaagagaaaggggtatttccggcc
ttctaacctggtttccagtaatgttccttccactgtagcgacctctcatggcgaacacag
cagggccttcaaacaaagtcaaagccaagacaaaacaacaaaggcagaaagcaaactgga
ttccatccagaattaaccccgaaatatcacaatcttctgcttgagagtgaggataaacag
atgtctctcatcccaacaaatgaaaggtcccccctcagacagcgcgttataattattaaa
taacttcctccatttgttcaggatcagttgcgacctcattacctggatccgaagataata
tctctaagtcctgggcataaatccaaaaaggtcattattaacagaagagtccccaaatct
gcaggaaaaggaagagcagcagtaattgaggaggcaaagcatttcacccagacctttgct
tccagtcgctgtggcaatagcaatcagcttccctggcactcctgactggtggacacacaa
ctgctagtactgtggatggtctcaagccttgtgagtctcaggacttcgagggcagggtac
taagctgacttgagggtgatttccttatcatcactccttgtgaagtcaggtcagaaacca
aggatcagatcactggtcccttgcactgacaacccattagacgttaggaagagccagggg
gaggggcccaggtatccttcgactctctgatcttggtttttgagagccccctggatctgg
atcataaaccagctaatcctgaggttcaggattaagaggatggtccctatccttaagcca
ccttggattaatccatccaccaatcaacaggcagctttgaactgctcctttccagctgag
cccagttgactaggagccggtccacatctacagaaagattagacttttgctaactgacag
aggagagccaaagtcttagcaacctcacttccccgcctttctgtcttgctttatccctga
agccatgaagtacaatagcaaagacattaaggttaggctcgggagccaagccaagtagga
cctgccactcatccgctggaaggctcaggcaaagttccaagcctccatccctcttctgtg
aaatgtgtcgtcatctttgccctgctttcccaacactgccaaaggatgagcagtgtccaa
gataaatgggctgtgtgggactcatccatattttgaccctaccctatcttcttccacgag
ccttaatcatcttcaccccacacccagtgtgatggtagctcgtgagctcctggagctctg
gggatagctacctaacaccaagccgtgccacacaagcaaaactatttaaggtcatgaaac
atctagtgagtctggaggatcaagatggggctcctcttaggtttctaccataaatgcatc
ggacggatctaattaagctcagaccatcacattaccactccaccccaagcatcaggggca
ccagcctagacccagggtgccccccaaatgtacctgataattaaagcaatttctgccctg
cctgatcccacacacacaccatcaatctctcccattactggagaggcaaacaataaataa
tttaataacttgggtcgagtagaatctggttccaaaacaaagcgttttaattctccagtg
cgctggctttcagcattactgtaatcccatttcccttcacttgactgggccttttgctgc
tttttaggcttctcgtatttctccccaagttttccccatggggccctgacagctgcatta
tagcagggcctggcagccagcatgacatcacttgctgttcaaatcagcagcggctggact
cattagcctagcaagctgccctcttgccttgaagaccatggagacccatccatgaagctg
caggcaggaaggccgtgctggacatcagggccctctccctttcccagcatcttttcctgc
ctattcctgagaccttccagtttctggcagccccggttatgaggaaaggcctggaaaggg
gagcaaaggaagagggtatgacaggtgacaagcccttgcttttcagagtcctttctaatt
tccatcatgctccctcttggcactgaggcttggatcgtcctcagtctaggagacactctc
aaactctaaagaggggtttgcctttgctaccttgtaaaagatagccaggactatgacaag
cacagaccagggaaagtctccctgccggctcctccccgccccgtccccacccaccatctt
ccatctttcttctttcccagcagccagaatggaatatgctgattcgagagtctggtgccc
ttgcctgaagccagggggccaaggagcagcagctgctggggaggagcatgggtaaaagga
gccgcaccaatggagccttcgtttaaataaagagcaggggagcattgtgctccattgatt
acgattttttttttctgaatgttgtgacatttgcaggaaggctaatttattcaagcatgg
aaatctttaaaaacttaattaagttatttctgtgattttccatgccttattgtttcgagt
tcacatttactttcatccttgttaataaaaaaaaataataataataaaaatggggagggg
gtggagaggaaggaaagagaagaaatgagccctccagcaccttccggactgtgtttgatg
ctctgttctccaacatgaggtctcagagcagctggggcttatggagtaggaatgtctcct
tcagggtcaggctccaggccccaggcccttggagatgagttctcccagtccctttgtcta
atggagaacccagcttcatcctgagggcattggcataagcagaggtaagtataaaccatg
gtgagtctcacaagggacaatgtcatcctgccatttggtgattgttctccaaagcagact
gggtactgcactctggagggtgtcccgggatggaatgactagggtagcctgatgaatggc
aagagcagaatccaagaagcaggaccccatcctccaagaaccagacgtcattcatacagg
cgtgaccataaagaattgcttttctctctagcctgaacccagagtccctagggcctttgt
ccattcctatctccagcaggtagtgccaggagtagccatggaacctcacgcagtgatgga
ttcaatgtagatcctacctgagtcactagggatctcagagcaagagggatctcagatgct
gaggtaggtatgggacagagccaaaggagagacttaaatgaaaacacagtcaggattcct
accaggaaaataaagtctatgctgtcagagagaataggtaggtctacctatactcaactt
tcatttccacaaaggcatacctgacaggattctggagtcaacgtggctccacactgaaga
attgagaagtgggttggctggaggctgagttggaaagaaggccactctagagtttgatgc
tgggaaggatctggttagaacaggttaagaggaggcaattactctcagctgccaatgcag
aaagacaaaggggaagtatttaagcacggggcaatggggagatttcaggctaggctcact
accttcatccctgggcttgcctagagaaaacttccaggaaggtgacaaacccagagcaga
caacattaatattctctactggggggaggggggcttcttgatgtcctttatttcactccc
tctaacttctctggagtatcagctctctgagaaaacataaaaatattcctgttatctaca
tggggctatgcattctgccccaattcctaaatgtattatctgctctaagtcataagttga
ctgcctctgctgggaccagaacccaggtcatctgtatgccaatggcatttgcatgtatta
tttttaagtcattagtctctgcctgatattctgagtcaaagagtttaataggagaaattt
atggcttgtctcctccaatcaacacaataattcatggttgtgttgcgtgtgctacactaa
tggagattgctttcaactgggtgtagggtgttttaatcccccttcaattcattagccagt
tcctcccgaagcattgagaagaacagcagctatttccttctacccaggctggctgctaac
acagtgggtctccaagtggggtcccctaagaggcctgcaggtgGTCTGCGTGCTAAGCCA
AAT
Primer
(+)cacCTATGGGTCCTGGAAGCTGA
(+)ATTTGGCTTAGCACGCAGAC


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