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Mouse element [ mm847 ]


Position: chr8:59,838,061-59,841,881 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Hand2 - Scrg1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAAGCTGCAGTTGCTTACTTAACcatctccctaacctgctttgccttgctatagccaaa
tgctatagattggataatttataaaaactaggtgtcttagtcagggtttcttcctgcaca
aacatcatgaccaagaagcaaattggggaggaaaaggtttatttggcttacacttctatg
ctgctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcaggaagcaggagc
tgatgcagaagccatggagggatgttcattactggcttgcctcccctggcttgctcagcc
tgctttcttatagaaccaagactaccagcccagagatggtcccacccacaaggggccttt
cccctttgatcactaattgagaaaatgcctgacagttggatctcatggaggcatttcctc
aactgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaactagcca
gtacactaggaatttacttggtttatggtattggaggcttggaagtccaatatatgatgc
tggtatccctatagtggttttatgttgggtcttcttataatagaaggcagaagaagggaa
gggggcaaacaagtccactagctttataactaagtcactccccagattagagcatcattc
cattcatgaagtcagagacatatgacctataaaataactttcaaatccataaacatgaaa
ggacacattcacagcacaataatggtaacaattagaatgcaaaaaatttaaatatttctg
ttgtgtgtcaaatttgatatgtgataagaaattatttttagacatttaatacatttggca
tagcaattgctccttggccaatacagaataacccggaactaataacccggaagctcacta
aggagggagaaaaattgttttctcatattgactttacttcctttgtcacatttgtgtccc
aatcaagaagaaaagtctcaaggaaaacacagttcattgttatttagaatttcagaatag
ctaattctcaaaccatgttttatgatcatttccaagggcttttactgtttagcttcatct
tgtttaaagatgttcgaactgtgttgagattcatatcaacaaccagaaagtaatatcacg
gttctggttgccattatcttgctgagacatgctagaactagactgcttgtgttaaaattt
aatggactagagaagagaagttttcaaaaaaaatcttaatgatggaggatttgactcttc
agacatctggcagatgtcttcttttctaaattcagaacatctgataaatcatgatttcct
caattagtgccctcagctttgactgcacgttaggatatctctaggctcttttttaaagag
gggtgagggttcagtccagtggtagagaacattcctggcatgcacacagccctgggtttg
agcccagcaaggcaaaaataatcagacaaattgagttgtttatcacggcactggcaagta
acctcagatctaggaagtcaaggtaaaaggagagagagttgagtcagcctgggatgcaca
gcaagtccctgcctcaaaaacaaaacaaaacaaccaaccaaacaaacaaacaaacaaaga
aacaaacacaaaacaaaaaactcaaaagcacaccaaaggaggaaaagtggcaggaagcct
tgattccttgctaattaaagcaaaatctctctggcttgggctccagatgtcattgttgtt
atttctaagtgcccccaagtgattcaaatatgcagccaggctgacagtcactaagctaca
tgaaaatgccatcttttagaagagagaggaagtgatgaggagggttaacaccctgcttct
aactctggccaactaagaggctttgaatggaaaaatcagaagtgacaggaacctggacaa
gggccacctggccatcagaaagttccagagggatgtcgtcactaccagacacactgttag
ccggagcttaagaaaacttcaggaaaccataaaaacctgactttcacacccttctctggc
attccaaaaagacaaggagacattctgccaaataaaattcggatgctaccacttcgaatg
gcaaaaagcgaagcactggggtgggggaacctctaaagaagtagccaaaaagattagtgt
cttccgtcaggaaacagtccactgagctaagatatattggaacatgttgtgtctcaagca
cgaaaggcaatctggggtcaggggagcatgagctcagaccagatttgcctggaatatgtg
agaaaagacacagaaagcctatgttcataaggcagatacatccacatagctctgtggaca
cgatggctactgttgaagagacaagatgagcaccccaggatgcagctgctctgcagacca
ggcaagtggtggttaggcaaaacctggtcaggaactgaggaggagcattctgagccaatg
gcagctgtcctaaataagtccaaacactggtctggaaataacaaaccatagtgctaatag
aatgtgcagacaaaatcactttactctttggaaaaaaaaaaaaacaaaaacggagatagg
ttaccagactctgccccacatctttgttttttaagggcaaagtaggaaaattcttagaac
tgtagacttgaaggttagctattcaaaagttccaggatttactttaaaatgccatttgaa
ttcaagatttgataattaaatcataactaggacatagttcatgaacagagtacaggcaag
tcataaaattttaaatcggcttatttaaattcagtagttcataagctttaagatgcagat
gaaagcaaaacgaccttttgaagttgttagctaaagtaccaagccacccctggatccagc
agcagcccaagcgccaaaccccaaccctttctgagcaccaacacaaagctgtaagtgaaa
aactgcatttgaactccttagatgaaggacagcaagtcaaatgtggacacactaaatatg
gccaataatattacctccaggctctatgtatttatgcgtaatatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtatgtgtatgtgtatatacatatatttgtgtatatgtatataacaca
aatgaggactgtgttcagatttggtcctgtctacaagatacctcgatatgcatatgcaaa
tatttcaaaaatccaaaacaaatatgtagttggaaacacttctaatcccaagaaatctgc
ataacacatatatctccattaatttgctcacaggtctacaactatgggccagcctggttg
gtttttctcttgactttttctggaacctaccttccttctttccttccttccttccttcct
tccttccttccttcctttctttccttcctttctctttctttcttcttctatttttgcttt
aatttttatattttttattggttactttatttatttacattttaaatgttgtccctcttc
ctggtttctcctctgcaaatcccctatcctttctcccttccccttgcctctatgagagtg
ctcccccacccacccactcctacctcactgccctggcactcccttatactgggacatcga
gcctccacaggaccaagggcctcccctcccactgattccagataaggccatcctctacta
cacatgcagctggaaccatggatccctccaggtgtactctttggttggtggtttagttct
gggatctttctttagccacttaagtcatccaatatcttaggtgacactgagtgatccagg
tagtcctcatcatgtttGGTAGTGGTTTCTGGCTGGAaGct
Primer
(+)GAAAGCTGCAGTTGCTTACTTAAC
(+)caccTCCAGCCAGAAACCACTACC


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