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Mouse element [ mm844 ]


Position: chr8:59,825,977-59,829,933 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Hand2 - Scrg1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACAGTGTCAGCCTCAAGGActtaggtccacatctggtcagtaccaccattcaatcagga
ctcccctaagcttgtaagagagtgaggaaaggaacccggcaaccgaacatggaaaacatc
ttcttggtcatgtgaactttattgcaaatcaggaagttatctaacagctgcccgaacttc
tgattccaaggctccaaatgttgactgcttcccataccttcccacaccttccggtgcgct
gcctgccaacttggggattttcagatctcctcttctcttcccagcttctgcccacatctg
gctggttgcatttggagatgattttccttctttcaattctccagaccacagctcccatgc
ttacctgagctgatggtttccctgtccatcctccaggaggagaattccaagtctcctgca
cagaaagccaggttgaggaggggtcagaaggaggaagccatgctaatgaggaagcctaag
cacacacacagtacacgcattctctgtacacctttgattcattccaggaaaaaaaatcac
agaaaaaaataaattgagtgggtgcctgagccagactcatgcactgggaaacggaccttg
tttccctaaaaggcctgacaaagacctgcacacacagtagctgcagtgatgatccttata
gccttggccatgggacttctggggaagaagggacaattgttattgttgagggaacagaag
cagaggcccacgaggacccaccaatttttgtgcagttcatttcctggcctcataagagac
ctgagagcatctcaagaggaccctctcccaccttccactagatatctccccaaaccccag
tccccctaagtaactcacacctagcatggaaggagcctgctctagctgactggtttagct
ggcaggacattactatgaccactgtgtggatttctggaccccaaaaggtcagagggagca
gggccagttggagccaagtccaagcataatccaagcataatccagatgtctaagaacagg
gacatctccagaggcccgtgtgtagaaaacccattcatcttgggtccagtgaatttactc
tgtggaaagacagtctaagatatgccccagcgaggaagggagcagctacaggaaggctga
cacagtctcctggctgcacagctccctgagctgtggagtttcttctgaattaaaggatgt
tctggtgtggtccacctggacagtgttgtgccacatgacttgtgccaccaagccctttga
aaacaaactcctttactttgagtgataatccaacctcacttaccctaagcaggatggcca
cacagcccggaagtgcttgctgagacccggaagcacctggagctggccactctcctcttt
aggagaccttggccatcccagtgtgtaaagcctcaagtcacctgggaccagtattatgtg
tttgtgatcctcgctcctcttgtcccacccacctctggaatatacacccgctgagggatg
gaaatctcaagacagcaaatggagctagtccttcgttttacttaagctattttggtctgc
cctgcggtggggcaggagacaaatgatactttataataggagcctgataactaaaatctc
atcatagattatagaatagatgtactagaaggatcttcggatgtgatcataattccacac
ataataacgcagtcacctgtactccctcccgctgtgtgtatctccgcggggtgggggact
cccagtgatcaggggtgagtgcgcgtgggggtacagaggctggggcgcacccctcagctc
tctggggaaccgggcttgcggggcgcctagctggccctgtgacccgcccgctgttgtaag
aaaaatgtttcagattcaacctgagcttcttttcgtagcacaggaaacatctgggaagtt
ttcccccagcgtttggaaaagtacttacttctcaacttggctctaagacaaacctgggtc
tgaagagggtgcacaggggttggcaaccctgcctgggtacaaactggggatctaactggt
ggcagacacttgggtgaaggacgaattaaactcttagtcccgcgtctgcgccttctggcc
tcattgttttaacgtctgtactacttagccacagtttgagaaagaataatgcctttacat
tcagaaaaacttcaaagacctgggcttgctcaatatggagcgcacatggtagtctccgaa
ggccttgtctgccaaaacatgtttctcagtatttttctcttttcttccgatctcccaccc
cccactttttttcctcccccagatgggagggaaccacaggctcaggttacctagggcggt
ttgccttcaagtgaggcagctagggctatcctaaagcatctcgggaacaaaatctcaact
aggaagggactttgaggatgaacggtctccccagacaagatggagagattgtaagttgac
cagaacccagaagggactgtgacagagtgagcgcatcatcagatttatagatgctaaaac
acagtgcccttttcctgcggatgcacacttttctgttggtaactacttttaaaaataagg
ttaagatacactggctgctctcttccccttagctcatggctctccgtgtagaaagtgttt
cctatttatccagtgaactaaccaaataaagacaaccatctgttaatacacttttcaatt
tttgtctaagcaatatcagttcgaaacttttttgaaactattatctagatagctacccca
acttacttacttacttcttttctcccctccttcctctctttcttccttcctaagttatcc
agcagagagaagcagatggttggctagaagttcaggtaaattgcttcaggaattcggtca
aggaaaatcccaaaacaatatgattcattaaactgatgtgcttcgacttctgacttttct
tgcagatgctaagaccccctccaaaaggcaaaggtatttttgtccagggcacatagctag
agtggagctggaaacagcctccttcccagactgactgtgagcagggctcaccatcccaca
gcagcagcctggtgggagacatcagatagcttcctcttctttagcctcttctattaaatg
gactcctttcaacacctctggggggaaaaatgatctcaggatattatccttcggcgaatt
tacatgcagagttagtattagaggcaggggtgggttcttaggactcccattttaaagaag
attcatgctgtcgccaggacatgcagccttttctaacacaatattgatggtggtggggaa
ggaaccacagcacacatggagctgattaaccacgaatcttatcaaatcttccagctctct
agcggcatataagatatacacagggccagcaggccaattatcatgccagcactcacaaaa
cctgtacttcagacctggcttcgccaccgacctattgcattcaatagccagccactttct
acagtttcagtctctctagatataagtatgcatgtatgcaaattcacatataaaatatat
atgcacttaaacataaatattaattttccatctagatgaactctttggcccacaaactca
acttctctccccattttctttgttattgtatttatcaatatttaataaacctcatgctca
catctggcggaaggtggagcttcttaggtgaagaattgagaacaacaggatccatggaag
agttttagggggctttagcccctttatcccacagatgagatgcagggcccaaagaggctt
cctcaggtcacccagctggaaatcccaggttggcttcctacacagtatcacattctttcc
agaaatttattacagaaatggggcctactagtctctgctgtaagcttgtgtcagcacagg
tcacatctctgtctacctctacctgccactccaatAATCTGCAGGCCTTACATGGct
Primer
(+)CACAGTGTCAGCCTCAAGGA
(+)caCCATGTAAGGCCTGCAGATT


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