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Mouse element [ mm843 ]


Position: chr17:26,948,554-26,952,485 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Bnip1 - Nkx2-5

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAAGTTCTCAGCTGGATGCtggcatctgctccctcgggcaggttcactgggtacttctc
agggcacacatacacacatgcaggccgtgttacttgccttaggtgctgtggatttggtac
gtttgatcctcttagagttcattcttgtccaagagctcaaaggcctttaacagtacccca
caggtggccagtaagggtgtggggagtggagggggacttatggcttatgtttcagcatcc
cacttagaaacccattacagagcatcccttgcttccaacagaaagggtcagccttccctg
ggcccccatcctgtgaaaggcgaaatgtggcacaaactatcttatgctggtcatctttac
tgtggcactgtgcctgggatgtcccaagttcactctgtaggaaggtggactgtcttgtct
agtgtgatggtttgctgggttcctgtaacaaatgggcacaaagtggccaagtgtcccagt
ctggaggcaggagctggaaaggcatgtgccaccaccaaaggatatgagggagagtccttc
ctgccccttccagctgcatgaggctatctcactacctctgctctgtcttcacacggtgtc
tcctacctcactgctccctctgggtaccctacgtaaggacactggacattggttttcaag
ttccctgggtagggcaggaggacttcatctctgtgttcttagtcacatatgcaaagaccc
cttgcacatggtctaggaatttgacaaggacagatgtttggggagcacaatttacccctc
ccacccttagacttggctaagacgggatgtgaactcaggctgctccgatggtctttggag
ggaagagagattgaggagtttggtattggtcacccagaacttcagagctgaagctggcag
agccagtgtgggccctccactcatggtttcattctctctctctctcttttacgagatgag
gtctcatgtagcccaggctagcctctgagtgtagttgagggtgaccttgactttctgatc
ctcctacctctacttctgcgtgctgagattctaggtatgaaccactacacccagttttac
tgggtagatggggctgaacacaacgcttcatgcactctaagcaggcacagtaccaacaga
gccccagggcttcatgcaaaccaagcatcaactgagccctagccacagccctccatgcag
ccattggactgaaaccacaataaaggagtggaaggggaaagaccaaagcccatggctgca
gcaagaagggctttgctcccaaaccttttttctctggctcattcttctgggccacagcca
tgcacagggagccaaggtcctggctaggagaagcagggtttccctactgcttcagtcttc
ttcctagggctgagcttggatcctttgaatggttccttctaagatctcttctggccactg
ctcctgaggtcttccaagtcctactataggctttaaagtcagtctttaagggtgccttgt
gctccagtgatgggacctgtggggagttaccattgagcaggactcagcttccatctgagc
agagttcagggagggaagatggatggtggagtggtgtgcggacagttagggagcatccta
cagctgggagcatgggaggagtctgcagaaggccggagatcatcttttagcttggggaag
ggtctgcatgggtccctggaagaggtctgagcctccagaataatcctaggatggctcatc
atggatcagtggtagacttttgacagtatttagccactttgggaggatagttcagagggc
caaagaagggcttgggagtagcttgagtggtggagtttcctcgggaagccccctaaaagc
cattgtggaagggcagagaccaaggtgaggggactagggagataactgccggacatagac
tgtcacgtagaaagcatctgaagtctgatttgtggacattccaacctgaaagcagaatgc
cgcctgagccttgcttggagataaggcgtccaacccaacgataacagtgccccgggagcc
aggcaggcgctggacagtgatcagatggaccagtagtggtaaatatagaacatgaaagcc
acagtgcagtcccacccccctctaacatgcagcactcacatatgacagacctgggctgcc
actcacgccttccagctcaccctggcccatcacacctttcgtttttgatagcttaaatgg
gcctaaggtacctagggacagagacagaggagtggacagtatgctgggcagaactcattg
taagaaatgatctcgctggccattgctgggcagcagctgtggagcctgtgaccttgttat
cttgatcagacctggaactgttttgtgatttttctagtccttgaacaaccctgcgtcgtg
gccacgagcaaccctgcggaagggtgacagatgtccactagtaaagtgccttgatcaaga
tcacacatccaggaaacggggctatggcagtgaccactctaccatcccacactgggttct
gctttcaggagtgtctccaaggaatcctggttttggtaacttgggtggaaattgcttgag
gcccagtttccttctctagctgagctcagagaaaggaatctgtatttgtcgataataatc
ttcaggatccccttttatatgtccccaaacagggcatggtggggtggctagccttgttgc
gggaatattaaaaagagcggcaagcttctacgctatacccagctactctctgccccagag
gtggtctccttagctaagctagcctcagcagcaacacattgcagtcttcccagctctggt
ttgcttgtctcagtggtgcccgtaccttctcagccataaaccctctgtggttggcagtcc
cacactccagtaacccagtgacaaaactctagaaacttataattaagcagtcagatttat
atatcaataaattctcaaaacacaagatacccacccagtaaattcagggccaattgataa
tggtacaagctgcccacctagattaaacaagttacccaaattattctatccctatatgat
gttatatctctctgtggctgtttaaaaaccacgcagaatctgagtcatcctattggacca
ccatgtcgctcccttctcctgggtcactccctgtctctgcaactcttagctctgcttccc
ttttccctgtctaatcacaggcctcctgctacactgatatttaaattaattggacaggga
aagtgctgccacatagccttgattcattactcatggaagtaatggttcagaagtagaaga
tgtgctgaaggattctctttggttgttatggggtttttgtttgtttgtttgtttgtttgt
tttgttttgttttgttttgtttttccagacagggtttctctgtgtagccctggaattcac
tatgtagaccaggttggcctcaaattcacagagatcagcctgcttctgcctcttgagtta
tgaaactagaggcatgtgctacccgcaggattcttacacagcatcaggttcaggacctgc
cagctgatggcaaagccactgattgccagcagactatggatctcttttggaagtgctcct
cctgcaccttgccttcagcttccccaagaaatcgggttcccatttgtcacaccaagggtt
cttgctctagccatggttagcctgggcctcctgcaccaggacttcctcactggatgacat
tcctgaagccccagacaatggagtttcaggtaacaaggaattagatcatgtcatagaaag
gatggagctggagatgaccatggaaacagcctatgagggctaaacagctcttatgggccg
cctggaattcaagagtgggactattttgtagccgatggaggtagacagagcacaaggatg
agcgtcctTACAGTGCATCCTGAGGCACcaat
Primer
(+)TGAAGTTCTCAGCTGGATGC
(+)caccGTGCCTCAGGATGCACTGTA


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