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Mouse element [ mm824 ]


Position: chr17:27,000,516-27,003,611 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nkx2-5 - Kifc5b

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CcCCTCTTGGGGACATTTGTGGTgctagccgatacataactttcatgtttaccccacatt
ggctaactactactttgcttgtggaagagcagaagctggctttgcaagtgagaacttcct
gtttgcccaacattttgcacacagaataaatgacagaaaacatgatcatctggccattac
tgctagatgttttgaaaattcctggcattaagtgatttacctctaatctgacctgttaca
tcacacagcccatcttctgaccatatgaactatgactatggtatatcaagattaataaaa
caatatgccacttattacatattcatatcactgtcaaggactcactgaagaagatcctag
tatcagctctatagtgttcaggtcaggatgagtctgcatatccccaccaaatttcatgtt
gaaatttgaaatttaatactctgaggtactacgaggtgggaccttgaagaagcaattagg
tcctaagagctctgcccccataagtggattaatccacttgtggattaatggattactggg
ctaatgggttatcttgagagcaggtctgtcatgtaagccaatttggctctatttcttacc
tagtcacctcttaccgtgtgggtccatgttacctctgcagagtgcctgccagcaagaagg
gtctcaccagatgtggcttttagactctgggcacccaccattagagatgaatagaactta
attctgtataaactagtcacaagaattctgttgcagcgctagaaaacatctaagatgcgt
ctttgagatggattagacttagagtctgagtaactcaacgtaaatgtggttgaagttgag
gtcctagcatcccagacactctgctctttagagacccacactgcctttgtactgtttcct
cccagtgttctctgcccccttcagcagcaggggaagggaactcccctttctatttcagga
ccctgctcaactgtcacctccattgtgccaccttctcttgacattctcagccacttaaca
aatatttatctagggaccagccattgacaagttcagtttcgaagtctgagggctcaccag
gaaaaataaaacaaacaaagagaccaaaaggaaaacaaggttcttgcgtttaggaaggcg
ttcctgtggaagaaaataaacaaatagacaccgagatcatttgcaagcctactgccatgg
tagttgagtgtttccaagggggcaaaggaaggagaggagtgagggaaagaccccagtgtc
taagtatatggctcaggcacacagacttcctggaggggagggcttgaagaaaacccatgg
gtgtgaagtgggctgggcacgaggcaagaaagcaatggctgtcttacagggggttaaatg
ttaggctgtttgtataaacatctaagtttctctgtctttcatctgtgttggggagcaaat
ccaggactttgtatatgcgaggcaagggctttgcaccaagtcagactcaagtcagacact
cacctctggacaattgtctcctgagtctgcacctaggtggatggacctagaaagaagaca
ggaagttgaaaaccagtatacagatgtttaaagccagagggaatgagtgaaattaggcag
aaagactgtagggggaggagtgagcccaggaacgtaagcaggggggttgtggaggaggat
gaggtggctcaggaatggtcctatcttggctcaagttattttttcccctcctaactctgc
catgctctattttttgcccttgttgaaagggtatgttcctcagcaaggctgggagtgtct
tgggtgcagatcccacgtctaatgttggtggttgctatgtgcagtgtgatgcctggtcac
agtgggtggtcttagatagtagctggtgtcacaggatcatacagttgaatgaagagctgg
cgtcagccggaggtcaggaattgtcatcgtggagtccacgcttccagcccagtgtgtgtc
ccccatcggtggctattggctcttgggtgttgtattccagactaggacctatgagagcct
acaatggggaatccaattaagacagtggggtgatggctggagagatggctcagtggttaa
gagcactgaacgctcttccagaggtcctgagttcaattcccagcagccacatggtggctc
acaaccatctgtaatgggatacgatgccctcttctggtgtgtctgaagacagctacaatg
tactcatatacataaaaaaaggcagtggggtgatgtcaaacagaaccttttgacagaaaa
ttgaatctgtgtaatgtggcagttggttgagccttagaatttgagcttttcaagacatta
aggagcaactgggtgaacagagcatcagtgatggttatctgagggaaagtcagagcctca
gcaaggagaaagaaaaacgagggaccagggattccgttttattcagaagcaataaatacc
acatcgtatatctgctctaagttttacacattttaatttttatttatcttttattatttt
taaaaaattttattttttacatgcactggtgttttgcctgtataatatccgtctgagtga
gagcaccgcatcctttggaagctgagttacagacagttgtgagctgccatgtgggtgctg
ggaattgaacctaggtcctttgggaaagcagccattgctcttaaccactgagacatcttt
tttttaaattctttaaaattattaaattatcgttgctgctgctgtatgtcttcgtgcaca
tgtactgtggcacacgtgtggagtcagctctctttcctcctttgtgtagtttccgttacc
cactgagccccacctctggcccctgcctgcattttaaacagagacttgttctcaaccatg
gaggaggtgagggttgtggtgagccttcagacagaagtaggtcttctcttgctagggaag
gaaaagggactctgggaagaggggaaagggtggggagatagcaaggcatgggcagcttca
cagccatgttatcctcaggatttgcatggggggagacagagcagtagaaagacagagagc
cacacaacccttctgcCTCTGCTTTTGTTGCTGCTG
Primer
(+)cacCTCTTGGGGACATTTGTGGT
(+)CAGCAGCAACAAAAGCAGAG


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