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Mouse element [ mm801 ]


Position: chr6:3,459,886-3,464,285 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ccdc132(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTTGCACAAGTGTTCATAAatcatttacttgtagccttctttcaaattgtaatgtaac
cagtactccactagatggcactttaaacctgatgaaaacagggtaggcatttacagcctg
ctttacttacacagaaacaaactgagaaagccgctacatttcatagattgttattgttgt
tctagtgggaatataagaaatgtaccatttttccacgtaatcagacatatggcagttcat
tataatcttatgtggtacatggtttgagggacctgagatctgagaataggtttgcattat
ataattagtttgaattgtttcttttggaagtagatcaaccctatatctatttgttcagtg
atttatgactttaataatactgatcaaatattgaaaaccatatattttttcttgttcact
gtatatagattttggcaactaaatttattaattttttgctttcaattagggctctaacag
gatgttagctttacgagaccacagcagttgtaactgtcatttctgccctgccatcttgac
tgatgaaaagatgctaacagttaaaacacacacaagacaagagagcagacaggaaatgta
tgcttagaggaacaaaatctctcctcctcatccttctaacacactcagtctgtctgtctc
tctgtctctgtctatctgtctctcttagcttcctgccctctaggtagagaatcaagcatg
tgtaaactgtgatctaatatgagagacgttggggttccaggatttattctattaattttc
tgcagttttgatagtgacctatgaactgagggattcatgtcagtttgcattatataatta
gtttgaatagctacctaaaattgagtgctatgtgtataaggtgctgtttgtgctgacttt
agttgtgaggggggcagttacaactagttacttatggattaggttttgggctcaatcagt
atggagttttggataatttgaaattaccaaaatgcaaagcttgtagttgttttatttttt
ccttaaacacagatgaattccctaagaagtgaccctgtgatgtgaaattgttttttaaaa
tgaccatttcgttccttagaaaccgtaaatatcttggaaatgttctcctcacatccttca
tttgagggcttgctttgttttatggatttgaatccccataaaaccttttgtttttatgtt
gagattaaaagtagcccggctaaagcagaaatactgactgaaatatctgttacgaatctt
tttcttcacttctcataaagctacatccgcagtctacgttttctgtgtgtttgttcctgt
agcgttatctacctccgagataatcgaatggaggagcagctaggtggtaatgtagtcaat
gtgctgcgtgtgagaccgggaaatagcctctaaacagcaagttccctgccaggttgctca
aataagccaggctgctttattcccttaataaaatattgaacatcgatgcttacttttgat
actgtgtctggtacaatggcatatgttatttactttcattagaggaaaacataattctaa
cacctatacatgtatgtatgtctgtacatacccgtggtttacaagtcccaattgttgcct
tgcttcttatggcttcctagtgttttcatgccatgtttttgtttttcaaatcaaggctct
ttattgcttgattctgcatcacaatttcataattgcattttgttctggtcctcgctttaa
acttggatttctctgtgttcttctgtcttctgaatttctctttcctccctggggttgaga
gcacttgtgcgctggtcttttgtctcctttcttccctccgctctgctggccttgctgttt
atttgttcatcaggctctttagtcactgctggagggcaaggccgatttttactcagccct
ggctgtgctgtggaggagagttttacatgtggagaataaaatcaacatttgctccatgcg
gctccactgaccgagggtcggtatcagagcctgtgaagcaggctatcaagcctaagtgat
ggcaccgtgggcccaagtgttcttgtgctttctcggctttcgtttcctctgtctgcagtt
ggatccacgactttgtctctttccagctttaactatgagatgcgttgatgtacattttct
gtattttagtgactgaccgttttgttgcatttttatagcatttacttgttggcaaattag
ttttggattttcacattttaaagagcttttacagtgcactaatcttaatactcatttaat
tatactctgtaactataaaataaatccttaaatacttcattaataatataacagttggca
agactgaactgtttatttcaaaatttacctgacctatctcattattgtaacctctttttt
cttaacatgttttaatatgccgtaaagggttttatttggatctagttttttctgtttgcc
ttaaaatttttatagggagtcttttgttcattttgtatataaaatatctcatacttatga
actaccctgttgattctattttagatacagaattgcatatttttgtacatctctaatgct
aggcagtgagtttttaactctagcaaaattatgcaacagttatattaaaatatgcagtgt
agctgtttgtgtttatttttctcatttacatacagaaaatactcttacatttttgtgatt
tctcattaatagaagcattatgagtttatggaccatggtgcttaccacaactgtctttgt
ctcatatttcttttgactatccctccctgttaaattacagaatgccctgtaattgttcct
ggagtgctgtggatctgggcactgcacagcatcacgatgtagttcccagtgtggctggga
ctaagcaggcggcctgctgagggaggaagtgtgtagggagggatgaggtggaaggaagca
gtgcctggcaggctgcacatgcagcagctgcaagagacacagtctcttccaagcagtatg
aatgagctcagatgtgcatttcacagagaagtcactagatgggctggaaggagggctgtt
ttattgggatgcagtgatgtatcagggtatctgggtccacaaaagtgttaacgggagaaa
gaccactgtcacaaatcatcaaggccaaactaattaaagcaagcaattagttaaagcaag
cttttttatttgtgtacacaagctgcctcctcctaaggtggggattgagaggtcagactt
gggtgtgaggaagacaagggtttgtttgtttgtttgtttgtttatgtatatagcgcaggg
tttctaaatcaaggatttggtgggttactagaacagaacataagcatagcatgttagcca
taagggcctgctgaaacagagacatgattacaagtggtcgtgacaacaggtagtcatagc
agggtagccataacaacccttttgaaaccaagttagggttgcaagatggtaattaatttt
tgaaacaaagttatgattgccattcctggaccgggcagaagggagccatttgtagttatg
gttacaaggagggtatagccgcatccttgagaaacagagttttaatcataaactggaatg
cacttagtgtgtctttactataagatggcttttaagcctaaggttgaggcatgctggttg
ttgagaggccctcactgtatgctctgccttttcctgccttgctccatttgtctctgccct
tcacttaggattgtcccattagagtatgaagtgctccatgttggttcctcgtgctctcgg
atgctgactgaatagatctctaggaaggactggcatctgacctttgtatgcttacacaga
ttgtaatggttttataaacccatcatatttttgaaatgtacatttgtgagatttttaaat
gaaatcacattttccctttggcaattttaataactttaaagcggatgaaaaaataggttt
gaagaggctaaatcaaatttccaaggttgtagagatgcaactaaagctggagtgtctttg
ccttcaggtcagcccgcctgtcctgggttgcaggagagcatcaacatgctgttgtgtgct
gtaatgtgctagttacaccctgaagatgagagggtcgcttgatcattgcacgcctttgag
gttttggacttagctagctacaaatgatagtttccaatttagtaacgttcaacatttctt
tttgaatggtaccaactgcatttatttgattgtggtgcttaggtgacatcacactcttga
aacttgtatttgagatgccagtgcctttttaagggaaggaggtttatgagaaaactctga
gttctctttctagttcatccttctcactttatatttgcatttaatgggtggaggctgcct
GTCTTCCACAGGTGGTGTGG
Primer
(+)CCCTTGCACAAGTGTTCATAA
(+)CCACACCACCTGTGGAAGAC


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