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Mouse element [ mm723 ]


Position: chr5:115,938,399-115,941,915 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Sirt4 - Pxn

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ttCCAGCATTGCTGGGTAACGAAGcctttttagcctctctcctcagaattaaagtctttt
cacagaagggttaggaagtcctccaaatccaaacgttggatttaatttcctataccacaa
aacggggttgaagttgatttggggccctttaatcttcaacactgggaaggcagaggcaga
agggtctctatgagtttgaagacagcctggtctacagagcaaattccaggtcagccaggg
agaccattgtgtctcaaaacaacaaacaaacaaatcttcacttagaattaaacctagaat
tcctgtatgagccagcaactccactactagtatataccccaaacaattgaagacaggggc
tgggctggtgagacagattgtgggtaaacctcccctgaattcaatccctgggacccaggt
ggtggaaggagagaactgtctcccacaagtggtcctctgacctccacacacttacacaca
cagtgttttcagatgtgtaaagtctctagcgtgagagcgtttgtcaccggctggtcctga
aagtgggccagggagctcagagtttaatgccgaccgagctctattttgggaagatcaggt
tcttacaatgaatgtgactgtcgtcaacgacgctgacatcatccttaagatagttaacac
tacctttgatgctattctagactttatatgcgtattttcttgtgtctaaagtcataaaca
agaaagcctcgttggaaaaagtggttaacgttaagcccaactttacaccttgacgcgggc
ggttgcctccgctcctttcccccgccccccccccccccacccgcaggctcggagaccagt
ctattagcatgttcggtcccataatgctttgcttcatttccgctgcttaaatcttaaata
aaaccagcacgcctctccgttctatcacatagagaatgccaagagaatgtccttgctgct
ctcatttccagggtagcgataatggagggttttcccgtttgctcgaaaccccctttttga
aatagggtcctcgtctgctaggaacgttgcgctggggcgggagttctttagctttgcgca
gtggcagtatcgtagccaatgaggtttatccgaggcgcgattattgctaattgaaaactt
ttcccaataccccgccgtgacgacttgcaatatagtcggcattggcaatttttgacagtc
tctacggagactgaataattgtggtttaaaaaaagcatgctactttttagagattgttat
agaatcctagtttacttttgttaagataatttcatttttcagcttttcctaccgtcttcc
tatgtgttagttttctatttccttgacaaggtttcctttttctcctgctatactgagaag
tctgttatccctggctgcagcaatcctgtctccgcctccggtctcctcaaacttgtatca
gtgactggcccaacactcagcaaatcctcctgtctccgcctccggagtgctaggtttaca
gacctctaaaccaccaccccgaggtcagcctctgcttcggaccgtcacgacacatgtcct
ttcatcccttctggcttaccctccttctcccgctgcggttgagcctccacccaggccatc
gcgatgacgttgactcgatttgcataagagtccccagcatcccaagcgactgccgcgtag
tttgcaaaacacggatgttcgggctcgagataacccactggcaagaacgtgtccacgcag
ataaccgagatggaaccgccgggctccgctcccgtcacgtggaggtcgcgcgtggactga
agctcaccgtgactgaaatgggagtcgtcagccctgggaggctgagcgagcacgcttact
cgtcagctttgcgcagtggcagtatcgtagccaatgaggtttatccgaggcgcgattatt
gctaattgaaaacttttcccaataccccgccatgacgacttgaaatatagtcggcattgg
caatttttgacagtctctacggagactgaatattcatgtttaaacattagacttgcattc
tactttatagttttctgttttatcctgtatttatttaatttcaagtttgcttattctctg
cataggctgtaaacattatagcaactgacaaacttgtattacgtctctctgattttccaa
atttccttgcggtattgtttagtgtagatgcgcacacacaataaggaaataatttttttt
ttttatctgaaagaacttcacgaacaccagtaccttttgaaattagggtaaaacgaacat
tgattctggtgatttacattacaactggctttcagaaaccctgaatacttgaagctctgg
gccggaagcctgagttttttttaaaaaaccttgacagtgcctggctatgtagccctgctt
gatccgcctgcctctgcctcccaagtgctgaattaaaggtgtgtttcaccttgagcagct
tttttgtttgtttgggttatttttttaagagataaaccggtgagttagctcagtggatag
aagtgctcgctatgcaagcctaatgacctgtattcgatgcctggaacccatcgaagaatt
aacagacagcggccaactgtcctttgacttccacgtggtacaggagcacctgaactcaca
caataataataataataataataataataataataataatagtaacaaagaggactgagg
ctatatctcaatggtagaccacttgcttcgcatgcatgagaccctgggttctatccttat
tagcatatcattgctaaatacgtatataattaacatatatgcatataagactgtccctgg
tggcccacactttgaatcctagcactggtaaaagcagtcagatctctgtgagtgcaagtc
tacaaatcaactttcaggcaagtctacatagtgagatcccgtctcaaaaaatacacacat
gggctggagagatggctcagcggttaagagcactggcttctcttccagaggtcctgagtt
caaatcctagcaaccataaggtggctcacaaccatctgtaatgggatctgatgccctctt
ctggtgtgtctgaagacagctaccgggtacttacatacataaaataggttagctaaaatc
ttttttaaaaaaccaaaacacacacacacatgcgtgcgtgtgtgtgtgtgtaaaatacat
atatacaggagaagagctgcttgcggaaggaatatagtaaaaccactttggagaggaatt
tgcaataccaatgaaggacccattttattattttttttaatttgaggtacataacttaag
ggtgacaaaaactcaataatcaaataaataatatttttagttaattgagtcaaggaggct
gagggcagaataagaagatcccttcacacaggggtctcactacatagcctctcagtctcc
caagggctgaagtttagagttgcacaagtcttttaatgtcccagaggactcgcagtttac
taggcagctgccgggaaGTGATCGGTTAGACTTGGCC
Primer
(+)caccAGCATTGCTGGGTAACGAAG
(+)GGCCAAGTCTAACCGATCAC


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