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Mouse element [ mm701 ]


Position: chr12:54,764,089-54,766,601 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Npas3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAAGGAAGCCTGGAAAGTCCcagaagctaccagatgaagttgtggtattgggatgttgtt
tgttattgtggatctaccaagacaaatacacttttctttctctctttctttctttctttc
tctctctctctctctctctctctctctctctctctctctctctctctctctctctctccc
ttccttccttccttcctttctttcttttccaaatacattctcctgttcaagaaaatcctg
ttgcccacctcacttcaagtcctggaccaattgaattctgacttcttcagctcaggcctt
ttccttccttccccaccccacatcttcccaattcctacaatgtgaatttgaacccagagg
ttcacagcatgaaatgatctcctgaccattgcctggtgtttagttggttgaattactcta
ggaaatactatttctgggtaaactctctcgatcaatgatcttttctgatgccattgagaa
ttttcctttctctaaacattttcataattagtcaaataaatatatttacctgttaaattc
ttttgtactaaatgacatgaaaacattttgtatatatgggggaggaacagatgaggaata
tgaaaagtaaatggctaactgatcattcagaatgcatgcccatatgaaaatgtttaatct
gaggcattaattaataacttccttagcccttcaaaatgatatctgttgaggttaacttta
tgctgatggtttaaaaataaagtggggtctctgtgaggcaaactggataaggagtagtgg
gtatgcagccaaaacagatgccactaattagcaatgtatggatggcatgcactagtcaga
gaagagtcactccccagacctctgcagcctccatacatcttcccttggtatgtttgctcc
atctccgaggtagctgcttctgcattggctatctgctaccagttacctgtattttagatc
tctgctctcctcttgcttctcccaaagaagggaggggagagggaaaactttatttactca
tgtaacaaactgaaatagagttaattttcagggcttcagctgaattattagaggttagtg
tgttataaatggtgaaagaagggccccttgcctgtgtggtaatgctgtcagagaccccgc
ggctgttggctcagttcatgatgtattatactgctagcatttcagtgctctctcgggagc
tctggtcccaccataaggtcaagagttaactacttgtattttagctgtgtaccgctatca
atactggctctatggaaacctcacttgacgtcatctctgaatctttgtgactgtagtcaa
gctttagtaaaagtcaataagaacattagattgttgtccatattatgacttgcaacttcc
tgccagcaatctaccaattcattagcagagagttttggaactctggcttgattatttatg
cagtcaatagcaaggcttgtctgcattcataattgtttgattttatggcctcttctttaa
acaaacattgtctatggtaatgtgatgccctgatggatgggaaaggttttgtctgtgaat
atcatttagataattaaaaatgacagatgaaatcgcccgctgtcttgacctgtactttgt
tccctcagtgatgctgaagagatgctgattgctgtcaatcaaaacccattggaggtttgt
aaattctggctgctatgaactctgacccccactgttgatctgaaatagataataaccttg
aaattctattagaatttaaaaacagttttactaaaggggcacgctatatatttcttttcc
tttagaacattctttacaatattgaaaattaaagtaaaatgcagtgtttaacaaatctta
atgtagcgaatcagagcaaacatctccttatattaccccagatttgtgattaggacttgt
atcctctgacttgatgtatttagtaaaactttagcttttgttcatttgttggttcatgct
taaaatttctttttgctaattttttagtatttctattgttaaagatgttcatgcctttca
tgtgtaatattttaatcttttccatatttatcctatccatttttaaaatatcttctaccc
acccacaaacccccctcacaaaacagaaccagtgactagaattttgaatttaccagaaat
ccaaaggccattgtttatgtccaaagttctcagcaaacatcatcaaaattttaggtcaag
agatcagactgataaatgcatttgccttgcaaatcatttttcatcattacacagatgctt
aaaatatattcagaagccccgctgctgtttgaaatatacatgcacgtacgtggcgatgga
gctgagaaggcagcggctgcatttatcaatatcatagtccttaaactccccaacagcaga
aaactcccgagcagattctacaggctagaaaattataacaattaggtgttgacaattttc
agtacactggttgtagcagaagtctgtaacAGCAGGGGCTATGCAGTAAGaat
Primer
(+)AAAGGAAGCCTGGAAAGTCC
(+)cacCTTACTGCATAGCCCCTGCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.