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Mouse element [ mm682 ]


Position: chr6:101,229,924-101,232,500 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Pdzrn3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
agtCTTGCAACTGGATGGACAGAtttttcccttctcaggatagagttacttggtgatggt
ggtggtagtggtggtggtgatgttagcccttccttagtaaaaactaggggaacagaaatt
tgtggctgcgtcatgtccataccgtactcccccacacagtcagcacagaggcacaacaca
gtatctcaaaccaaatgcctggtgctttactcggaaactttacctcttaatgtggtatcc
ggcatcgagcaagtatctgtattgtagaaatgtactgactgtcatctcagaacgctgtca
ctgtctgtggagggtgatacccacctaaggaagataggctctttggaatttgcatcggag
atgaattacttctgtaaggccacagcttttatagttaatgatataacttgaagcatgcta
ctttgggacccaagtgttaactatgaattcactcacaccctcagtggtatgcgtctaaat
gaaaggtaggtctcaggaaagcacacaatgtcctagctaatgagatatgacaagaaaata
aaggtagagatagctgatgagaaggaattcttattatttagaggggacatgatagggtat
tcccaaagagctttatacaaaaacaaaacaaaaacaaacaaacaaacaaacaaaaaacag
atgaagctattttaaaagttatcaataacaacatctgctcacacatgttcatatatccat
atatgtattcatatataggcataatgcacactcacacataaaaagcatcaagtagcaaat
aaaatatgtggtgattccttgccaggagaaaaagcccacgtttttttccccaaggagcat
gggaaatgggatggaagaaaatggatcagagcacttcaaataactgaaagctaggagtgc
agaaacggagcagctggtgaaaggtccagagtgcagtatggtgatctagcgtagagatga
gagccttcaaacagacctcggccccagtacagcgcagcaggcgacacaaatccccccctc
attcagtactgctggtgagtgctttctggaagctgtttccatttaggagcaaacagattc
aactggcagaaaggaagcagaaagcttttgggaaagcagcaggaaatgaatgggggggtg
cattcgctgagacctgggaaagggtccagagcgtgcttgtaaaaggagttggggagtctg
ggagccaatttcccaaatttacaatttggagatggagggaagttcaataccgtgaaggaa
ttctcattcgcaaatacagagggcttgcttgctcttcttggagactgcgcctgtcatcag
acacttgtgttctgggtgtatgggaaactttcggactcgaaggtctgggttttactttac
tatatcatcttgcaaaaaggaaaacgggacacgatagacgtgaccatcctcttaacatag
ttaaactcataggtgtatcaaagaagagtggaggctgaaagtctagctgacagaacttag
agagaaaaaaatcgtctatgtagccaatacataattcctttccccaaaagaattttttaa
aaacagatgtttaaaaactataataattctaagtaccttcagccctgtaggaaattacaa
agagagtttgaattacctttgataaacaaattagccccttacaatccatagagcttagaa
aaagctatggccattgggacagctctgacccctgtagccactcactgtagtgagccttgc
agagagtttgtagccaggtgcatcctccaggctcagaaaaggtctgtattcaaatgagag
agaagcgggcttcccagtgatgctttgatgtgagatcagccatttctaataaaagccccc
cccccccagacggggttacagagcagaaatctatatttagaaggatatgtttacactggc
aagcttcctgtttaattaatttccatttataaaggaatagcggagattggtggcattgtt
aaccaggcatgcaaattaaaaggggacataatcctactgtgcattttgggaaaacagcca
gtgtgtctcaggatgcaaaatgcaccacagacagttcagagttgtttctttaaggatata
ggtagtattctttctaaaagtttaaaaaataatgcctcaggctgcggagacccttctgtt
gatagagtgcttttcacgcacaacttgcatctgatccctcgaatccatggaaaaccagaa
tcaaaacaaagcaaagtgaagggcatggtagccatgctggtaaccctagggcaggagagg
tagagacagggggagccctggaactctggttagtgagtggagccaaatcagaaagctcca
gggcctagtgataggataaaaaccaaggagaatagagtctaatggaggacacccatggat
gttatttagactccatatgtatacaagtgtcacatatgaacctgtatatgtaagtttgca
tgtatacacacacagacacacacacacacacatacagagagagagagagagagagagaga
gagagagagagagccttctacatgacaatctaaaGTTATGGCTCAGATGAATCAGAA
Primer
(+)cacCTTGCAACTGGATGGACAGA
(+)TTCTGATTCATCTGAGCCATAAC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.