Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm677 ]


Position: chr4:89,135,610-89,138,124 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gAaCGAAGCCCGTCTAAAGTCTGaatgctgctaagccttacagaatcaccataggcctgc
agattgtaggggaaaaatgaatgctcactcacatcagttattgagatttggggtgattgc
tgtacatctttgcagcaggagaaattttactagttctctagagtcagaactaaagcatat
acaatcaggctggtcatcctgtttcaactaaattttttgtttttagtaaatattccatag
agtcattctctctgtctctctgtctgtctgtctctgtctctctctgtctgtctctgtctc
acacacacacacacacacacacacacacacacacacacacacacatatacagatacacag
acacagagacagtcacacagacacacacagacacacatagacacacacacagatacacag
acacacagatacatagacacacagtcacacatacagacacacacacagacacacacacaa
acacacacacaaacacacacacacaaacacacacacacacacacacacacacacacagag
gactctccctcaataagagcatatgtctattacagacaaagtaagttaagttgttgggta
ctggcatcctcttagaagagcacatccttctgagggagatagtgtgagctgaagaggagg
tggccgactttattgtgcatgacgaaggctcgcttgtggacagcaaaacagaagatactt
taagaagagcagtctctctccttgcaagagtctcagataacactttcattttcccagacc
tgctcagaattagcccaactgttgccactgtctttcatttgcatcttgtgtgttcaaagc
tacttgagttgttttttaagttcccagagaaagaccaaaaaaggcttcattttcccattt
cctaagggggtaattacatacccggcagaacaacaaacttgggccctaggccgtcagtga
aatctggtttctgtcaggtgagagctcttttgtatatggaaagttaagagaggaatatgg
ctttagcaataccgtagggagctgtggtcagcatggatctgataaaagcctttgttttcc
atgttttgattggccctgtgagatgtcccaacggctcacagggccatctgtattcctatt
agtgggacctaaaattgctgacacaggcttgcagctcggcccagcggcctgccagggtaa
acttgtgtaatgtgctgcacatcccgcctaacaacagtggttcttttgtcacttgaacag
aggcgattaagaacatgagtcattaaaaagagctttaggaaagcaggccattttccagca
ctgtggctttgggggagttcataacgtcccagactccggacaaactgaaggatttctctg
atcaccaacaatctgaattgatttgagagaagaaaaaggagactattccaaagtgtcatt
tctaaagcttaaaacatgcctgttttttaaaatgagaattggaatagaggtaacaaatgt
tttcccgaatttttatcaatatggcaaaaggattattttccaaccttagtaagtctggga
atgtctggtttcctaacaacggcacaggcattttttttccatttcttctctttactccac
cccttcctgttctctttctctttaaattatttgtgttactgttgttattgacagagctct
tcacatgttcatgctgaccctgaactcctggagtcagccccccccccacgtagctgtgac
tatttccccatttttaatacatccaaaagtgaaagcataggaaaatggggactacaaagt
atttacttgacctaaataaaaagatactgttacttaatgctcttctctgtagcatttttt
acagtactttttgtatagttaagatctgtgcaatttcatcttattcattttcctacgctt
ctgctactctattcagagactgaccatatggcccattggctgaacttggcctcttgcttg
tgtgttgggacacagctttacttaagtattcacacattcagccgaatgagcagtttcaac
agagcctatgtggcctcacaacattaaaatatttattctctggcctttaacacaaatagt
ttgtaactctctatgataggatgttagagtcccatgccaaaaacactttaaagactctca
taaacatatgttaggtgtttatatatctgccactcactagcattgccttctgaaactagt
cagatactttatttagtagagccagatgtatatgcgtgtatataaaataatcacacacct
aagaatcatctacataagccacatgtattgattttctaagtttatagcattcatctttta
ttaatgtctattctaaaaattttttgacaatttcatagaaatgtatatatatacagagat
atatttatatacacacatacaccaaacataatgaatttcagtcaagtttagtcctcatta
cctctctcataccactttcttccactaaaaattcTCCTTTTACCACCAAGTCTCC
Primer
(+)cacCGAAGCCCGTCTAAAGTCTG
(+)GGAGACTTGGTGGTAAAAGGA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.