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Human element [ hs666 ]


Position: chr3:137,360,823-137,361,964 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: IL20RB - SOX14

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGGGATTCTCAATGAGCAGAGaggcgcctactacctccctgatgcaacctgtcttagat
aaggccccaagtcagccaaaccctcaccttttctcaggactctgataagacccagaccca
caaactccccagggtcctactcacagtctagcaacatgccgcacccccaccccagatttt
ttttttcctaagcagacaatgtggtattgtgattagatataaactgaaagtgtattttct
gcccttcagtaattacactgccttatggtagcattattcagtgtgaagccttattatacc
gcagaatgaaattctgtataattttcttctcctccaatgcacaaatggaaatcatatttt
ggtctgagttgggaagaaaggctcagttatcacttgtgagcgtggtgttattttccccag
aattaaaaaatccatctgggtgtccgacctcgctcaccctgctgcctctccattcagcct
tttgtatgcagatgaaccttatcaatttccaccgcctcaaaagcccgcacccagcttggt
gcttccccctggtccgcgcggctttaatggaaatgcatgaggcttttttttttttctttg
atgtctgtgcaatatacgcatgtggataaaaacctgtgcttttatttagggggaggggga
ggggggttcaaatcaaagttaaactctctaccgtatcgctcctcgctggcgattagcgga
ggagagaaaggaacagcaaatccaacacagaagctgtgaaactggggttattcaaattat
tgactaacaaataaagggcatgggatgtcacatttgtattctaagggttttcatcccgcc
acaggcctcatcaacaacttagtggagtgctactaaatcccctgtgttaacatgcggggc
tcggggggctccgtgtgattaatgcattaattgcagctccctcaggcctgacgcaggctg
tgtcaataattcacttaaggccagttggcccttgagttactctacagtctagtgtaaaca
actcgcaaataacaccactcaaccatttaccccaatccgattgctgtttcccaggctatt
agcaacttccaatgaatgattcatccgctggtgacaaagccTAGCCGGGAAATTGTCTGA
AG
Primer
(+)CAGGGATTCTCAATGAGCAGAG
(+)CTTCAGACAATTTCCCGGCTA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.