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Mouse element [ mm665 ]


Position: chr1:34,046,581-34,049,085 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Bend6 - Dst

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGATCGGAAGGCAGGATTAGcttgaagcggagcgagccggagagccagagattggtggtc
agactcgtggacgggtggagtggtttggaaattgtttagacccaggtgatgtcatcatca
ggaatgaagcctgcagtggctgatgaaagatgaggagagtgggttgtgagagcactcagg
gcggagaaaagctgtgagtcagagacaaacatccctgcctgttactacgtggccatgcgg
taaccattcagaggaagaaggcagaaagttgagcatccttccccccccccccccaccgcc
ccaggtggagtctttgtgggagcggagagcagacatccatatgtgtggagtttaatggaa
ggcaagcagttaagatggtgtctcctgaagggaggtcaaactgagactcagacagcacag
cggaggggagcggtggggggcggagcagcagtttagtcatggctgtgaagagagttcaag
gacagcagtgcatctggacatgtggtgtgtggacatgtgttgggtctgcctctgctcaga
catcctaatgagtccaaggatagaccctgaggaccgagacagccccattagacaccctgg
ctcgtaggagagtccaccagcttcccagcagcctctcaggatgattgggacctagacaaa
ggttgtttcagaagtttagaatttaaaccttaaaaacgatctacaattaaatgactacaa
agtatatcattattttaagtgagtagttacagttaaatttttatgtaattgtacatgagt
ggaatctaagactgtacaaaaaataagataataaaacccctttaaatacttaatgggaaa
atactggcactgagtgtatgtctcattgcttgtctactatgacactggagagccggtaag
agtgctcagggccctgtgattatcttaaatcatcgctggcttcgggagcagataggtctt
cagccaggagttgttcagagctgtgtattggtgcacagttgaagatggcaccagtaaaga
ttgatataaaacttgttgaggtggttgggaagggattggctattctgagggcatctctcc
tttcaagggtattaattttggatttttttttttaacctttggtggtttgagacctgatat
cattgtatttttggaatcttttaaatatcacagtttgaggtatgtgggcgttggggtaga
tgcaatggctgtggttatgtgtgcctataggctggccacttaggagttaaaacaggagca
ccattgaacccagacctttgagaccatcctggctaacacagtgagatctggctctttgtt
gtaggagtctggaaaaataggttcatatttacagcataggctgctatggattttgctgtg
gaacccagctctccctgaactcacaaggatcatgtcagaggacaccagtcccggtcggct
aagatgtcgctttctgtcctagcgtgttgcatttccatgtgtgctctgtagtccatgtgg
ccagctgctcctcatccctcatcttaaaatagatggtgcagcacttcaactgcccatgcg
agcagagtgctggcctgcccaggggactgggaaggctgtagctgctgattttcaagtcct
acttccagcatttgccatccaaaaattaagtcagatcagccttccaatctcagtgttttg
taatttgaacataaacccaccctaaatagggaaaacgaccaggtagtattttatgatcaa
aacgagataattaagaaatagtaattgtggtcaccaaattaatttctttattttatacat
tgatttttttgtttgtttgtttatttgtttgtgttttgaggcaagctttctctgtgtaac
agccctggaattaacttactctgtaaaccagactggcctctaactcacatagatctgtct
gtctctggctcccaagtgctgggactaaaggcatagactaccatccatgcctggcttatt
cgttgattttttaattgctttttgcagttagcaacattgtaaaaagtggtatcattcaat
aggtactttcatcttttttggtattaagaaaatactttccgtgtttttatacatgcacta
ttcagtacatttctttatttctatctttttaatttattaacagttaaacttaaccccaaa
tcaatatataagtaggccctttattattttgaagaggaaatattaataatattaaatctg
aacatctaatgcctttcaaggtgaagggtttctgaatagtgcaggacccttaaaagcaac
agtagtctgttggtcacactgtgcgggaactaggtgaaggactgtgaacagagatgacac
acatactgtggcaacacctgcaggctgaacacatgctctccctggtacacactggtttcc
tgttcgcttctgtgtctagttaaacatccagagttttcttatatctataaattaaaatat
atattctatccataggctttcTAAAGAGAAATGGCCTTGCCacat
Primer
(+)TGATCGGAAGGCAGGATTAG
(+)caccGGCAAGGCCATTTCTCTTTA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.