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Mouse element [ mm560 ]


Position: chr10:122,349,124-122,351,136 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ppm1h(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCCATCTCCACTCGTTAAGgctaaaaccctttactcaagggaatgataagatcatatcc
aagagagaaatagctaggcggcttctgttgcgatcccagaaaagcgggttaatttactta
agccatctaatgaagaatcagactgctcctgggtcttcagggccttcccgctccactcac
gaacgccccgcccacgtcctctgcaaacccccccccccccccccccgtattttcctgcta
tgcttgggctctgccaagcatggatcttttccttctcatttgggttctaaatttcaaatc
cagctcagtctggtggttttaaggactggagctggggggggggggggggggggagggatg
tgattcaattctaagaaaattctaagaaaaagagctcaaaacccttcttggaaattccca
ctgatcccactcatcactgcggctcctaatttgatttgatgaattaagtacaaataaatc
aaaaccatgtggatcaaatttatgtttaaaaaaaattgcagcggggttttaaaaattaga
gaagggtttctttctagccaaacacatcttcagttttgctgaacacaaggcgctggggaa
aaaaaaaaaaaatcttgagtttgccaaacctgaagagcagccgccaggtttccggagcct
ctctcaaaccttctggggtctaaagcagagatttctagccaagacctgaattccacaaga
ggcccccgccaaaggaacaggggccttgctagcagcaggctgcggggctgtgtaggagac
tttcactctccatgtcaacagcacctggctttctctgtgtgaccgcaccgacggcagccc
ctcccccgggcctctccggccaggtctggctcttgcctaactaggaagctcgaggctcaa
ctgtgcatcctgaagagttcagaactgagttgatttgttaactcaggcaccggtgcccaa
gccctcagcatcgccctctctcctaacagtcctcccacctccagcccggcacacaagcat
cctgttactcagacagcttggcacaggccgaaggcctcgacttccagatgttccctgctc
cccgcccctttgggcctgtgacaggccctctgtagagctaggattcctaatttcaccctt
cttttccggcctccactccaagactgtgccccagtttggtctcttggaagaacaaggccc
ttttctgtctgggggctgttctgcagagccaactccctccctccctctctccctccctaa
ccctgctcggcagtcgtgtcttctagcccagccagacagaaccacaatcaggctaatttt
ctctctgcttcgcctctcctctctctggttttcgggagtccgtcagctgtttcttataac
gccagctcgtttagctcaatcctgggaattttttttttctatctaggtaatctttttgtt
ctgaaactctcctctcataaaggacaaagagctcgagtctgagttccactccagtcgccg
gctggctcccaggtgcttttccttcatcgtggggcttggcttggcctggcctggtggatt
atgggtagggggaaataagagcgtcagtgaaatcccgggcatgaggtctggtgtgtggtg
atgggcagtaatgttctccccttctttcttactggcttccagaagactgtttcacactga
ggcagtttcatattgaagggaaatatgtctgggagtcctggtactccccttgcaatcacg
aaggatatctacagccttctatttatgttttaacgcccgtagtcttctggttcttggtga
ctttttgtgctccaggctacaatccccatttgtgctcctgccgtctagtttataagaaac
agtaattctcaggtaccatgagaaggaaagtcagttgtgcaagcgaagcttacagtggtt
gcatgagaataatctagagagtgaggaacgttgttatgccagacagtcttcaagccttct
aaagcggtcgttcTCTTTGGCGGATAGAAATGG
Primer
(+)CCCCATCTCCACTCGTTAAG
(+)CCATTTCTATCCGCCAAAGA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.