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Mouse element [ mm54 ]


Position: chr9:45,926,332-45,929,629 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Sik3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tctgGAGCTGAGCTGCTGAGGAACagagtagcctagcttgccggatgctcagcacacatg
tcctcagtagttaccctgaatggatgtctcctgcgattgcttagctgttagatcacctag
accagtgctatccactagaagaggattatatgtcatattgaaatcttctcctccccttct
gttttgagagtcccaccaattatccatggaattgtgattctcctgcctcagcttctcaaa
gtagttggaactgtaggcccatggcaccaagcttggcagtatacacatttttaaaaagtt
aaaggatatagagttaattttgagtaatatattctatttaacttaatatctaaactctta
tttccacatgtaatcaatagaaaggtaggatggtgagcttacagtcctttggtaatacta
atgtgataaatggtatatatttgtgtgcactgtctacattcaaatgctatgtaaccatat
gtggctggtggctactgtgtacgattagacatatctagaccattcggtaattctagaggt
gagctgagaacaatctagaggagataaaatttgttctagaaacaggccaaaaaattgcct
tcatgtaagagaacactcacctccctaaggtttaaggacacagtggaactagcagaagac
atttcagtgagaggggccgcttctttccttgaaggatgcccccttctcccgaggaaagaa
gacagactgtgctttcctctgttggaggtttttttttttttttttttttttaaagctgtg
tatttgtcatagtgtttcactgaaacccccaccaggggtttttgctgggaaactgtggtt
ggtttgatcttagagttgaattttctcctggtgtcttggttctaccaccgtgtctttcct
cagaatgtcgggtcagaataagcaggagaatgactccctttgggggaagcagccactaat
tcttctttcatcttccttctgtgtgtgcatccctgtgctgcagaatggaggcaagggtta
aagccactgtggtttcagaagtgagaacccccgagagcgaggagggaagttctggctttg
gcatgagccgaacttaatttctttcttaccagatgccaatttaaaaagaattcgttgaag
ggaagtgtcttgcggagggaaatttttaagaacgttcacaatctgcatctatttagcagc
ctatttgatgtgatgccatgtttaattaatgttggagtgtcagttcacacagtcatattc
tctgcaagggaagaggattctgtggagaacagaccaggctacaggactcacaggatcctg
cgctgtgtccactcccttcttgttaatagtttccatgtgcttgggtgagtgtgtgactta
caggtttccctctcccatctctaacaacttactggggacctggggagatggctcacaagt
taagagcactgactgctcttcctgaggacctaggttcagttcccagcacccacagattag
cttacaaccatctgtaactctcatcatggaggctccaactccctcttctggcctctgagg
gcatcaggcatgcacatggtccacagacatacatccagacaaaacatccgtatccctaaa
aattaaaacatgctctttggaagtttgtctagttacctgcagatttacttctgctatagc
atgattaatttttaaaggagcctatgtgtactttaagctacagcttttatcatatagtct
gcagctgtgaaaaaaacccatgctcagtatgctgttctcaaaataatcctgccgcgtgcc
agcccctgctctgtgacttcatcatttcttctgttgttcctcctcctgctgtttagaacc
ctcccctttcctgcttacagctagggcttgccattgtctagcggtactgcagtgctcttt
aggactggggctccttagttggggggaggggcagggacacgcacagcctcagcttgggcc
ttgctgtggtttccgccctgtggttcaggatgactgtcctgaatggaattcattttccct
cagctctgttccttccatactcgttacacatcagctggcagcaggccaggagcttctctg
tgctcccacaaattgtcagctactttacttctggcccctggcttgccctttgacaaagga
attgatgtttttgattcagaattgtgttgcttagtgaagccagtctaatccatgccatag
aatgctcaaagtttaaggccacattctagaaatattgaaagcatcagtacctatattcaa
tagagcctcctcccacccctgccccacttatctgtaggtgataattttcaagaccctgat
gggggttcctggagccataaacagtggcacccccttctccctcacaaataaaatagatta
gccgtggactgcagtaacagttatgtggatatgctctttatcttgacagccaaccaactg
tagatcttagcagctctagctcatgatttctcttccatttctattgttggtttcttgagg
cagagtcttgccttatagcccagctggcctcacacttaggatttcttgcatgaacctccc
tagtgtacaggactataggcatgcaccgtcatgccagctcccttctaataaaggcaagag
ggtgaaggaaggaagcccctctcaacttccccaggacaccccgggactgcggagttacca
gcatggctgctcttgtactttggggtacttggatcagtaaaacacaggtcacctgaacat
gatctgagtgatgttgagcagcgagcctgactactgagtaatagggtagcgaatatggca
tgggtgtgctgtgtggagagatgattcatgccccagcaggacacaactgcctatagacaa
cttcctcaagcttggtagactgccatcagtttaaaactggcaccctttatttctgtaatt
ttccatttaatactttgagattgaagttagttgctacctgaagctgtatagagtgtgaaa
atggaggttaggatggtgccaatctcgtgtatgtgtatcacaggccagacacacttaagc
aggttgtgtgcatgcccatgcccatgttttacagagaaggagatacaggagttaaaataa
cttgctctatattatacattaagagaccgttctaaactttttagtttaagcaactggctt
cttttttgtccttgcttatgatcctgtatccagaactgggccaagctcccctttcagtgt
tttgtggagtctttgtctcctttaccctaaggagcagcCCAGAATTTGATGCTGTGGA
Primer
(+)CACCGAGCTGAGCTGCTGAGGAAC
(+)TCCACAGCATCAAATTCTGG


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