Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm51 ]


Position: chr11:53,870,165-53,872,917 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Pdlim4(intragenic)

Timepoints:
e11.5

Expression Pattern
forebrain (6 out of 6 embryos) 
hindbrain (rhombencephalon) (6 out of 6 embryos) 
midbrain (mesencephalon) (3 out of 6 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 6

Fasta sequence
CtCCAAGAGCAGCCTAGTGTCCatggttggagggagagtggcctgagcttgcctctcagc
ttataaggacaaggtaggggctctgtggctctgaacagggtctgggtgtgtatgtccatg
cagagtccaaaactatgctgacctcagccctcaggcacgcaaacacacactgcaatgtga
acagggcacacatactctcataagtgcatttaaagacacatacatgggtaaggacaatac
acacacacacacacacacacacacacacacagccagtctccttacatattcctatccatg
aatgcgaggtctcacatacactgggagccagtgctggtcatcctgaggaaggccatgtgg
ctaaacctgggatggcatgagaattcctcatttaggggacaagactcaagttcaggccat
gggtctgtctcagcctgggggatcacacacacacacacatataaatataatatatacata
aatatacatatgtgttatacacacatgtatatatatatacacatgtatgtttatacacac
actcatatatcacatatacaaatacatatatatgtctctccactctgtgatggggagacc
ctttcctagcaggaaagagaccagtttgggctcaggcagcttctagcaccgaacagtcta
gctttcaaggctctgcattaatcaccgccccccacccccattaaggtaccactttcccct
tcaaatccaaacaaaaagcaagaggcttgctggctaagtggggccccatcaatgctgctg
gggtggcaacagcagcaggaccccagtctcccatcaggcccagtgaaagcccctagaaac
ctgagcaccctcacacatgtatctgcagggtagacaggcaggcagggctggcctctaatg
gggaccagatgggttgtggtcggtaggggtggggcggggagggggtggggctgggctctg
catgagacttcaatggaaagagaggaatgggagtcagcagagactgggggggactgaagt
cctcactcaccccctactcagctcagcagggtgtgggagcagggtcattggtgagctctg
gcccctcctgtgaccacccatgcagcagcttctctaggtctgaactcagtggtttgagtg
gcagttctgtcactgaactggtgactttcatctctctgaacctgtttcttcccctaccct
ggagaatgcgatggctctctagccatcagagcccctcagtaggggatgaagtaagaccac
actgatcacaccacgcaaagtgcttcactggatggctgttggtgggaatccctgcatgcc
ctccccctctttttcctctctttgggtggcagtgttccacacaaccttttgccccctgcc
ctgagtgacagcttggtacttgggtcagaagaatgccaacaaaaaggggtgaccagacat
aggcaaacgctgcacccaaaggaacaggtggatctcttcttaggccgaatctcagctttc
agcagtctgggtgttcaaggcccccctactccagaaagcttttcttagccagatgcttct
cccaccctgggcggcccgtgtgccttctgtccctccagggccctgagaaaagagggtcct
ctgtggccttgcagagaacgtggtcctgaggctgcagttacccattcctcttggggatgc
gtgccaggggtgccctgtattggcctaggggtaagtgtagttttcttctccctaaatggt
tccagccagccccacctccacactcagaggagggggcagtgtggggacaatgagccctgt
gtctgtgctcctggggacacagccccgcagaggcggggagggtgtttttgtcgccaccca
tggagcctacgaccttttaaatacaaaaggggggcagcagctaaggaaactgctctgttg
attgtggaaattcactccccttacagtaaggagtaaggaccatcgctgctggcctttgaa
gaaaaactgtgagaaaaagaatgggggcaggagaagtccccctgcagctctagccaccag
accctgtttgaagctactctcagtcccagcctcccaaccccaaaggaaaggcatattgcc
atgccagctttcaaacgccacaggggagccccctggagcccactggccttgagtccctgg
tgactccctccgctcccaactagtctctgccctgtccctttcagcactgatgctgagagg
agccaggcgtctcacaggaacagcccgcccgccttctgctccctgttgcctgtttttttt
ttttttttccttctgccaaatctgttctcttctccctgcctgaagggcctcagacaaagc
aagctactaagatccaaatgtttcccgggatgagctgaagtctgggacaaatcagctcac
cctctgccttcaccaacctcccctgtcactgctctgatctcaaagcacacgcacccctgg
gcttcaggtgcttgtggggtgcatttcctcttcctacccgctctgtctgggtcctaaggt
ttggacttgaatctccttcctctggagagccctctctgacttcttattgaaatgtctctc
tgtcctggtcctttttcttccatgtggagagagcagacaagagcaggcccagaagccaca
cctctcatactgagtactctggattcaagctacatcacagattagcccaggagtgacctt
gtccagggatgtggagcatggtctaggtatctgGAATTTGGTGCACTTGGCTT
Primer
(+)CACCAAGAGCAGCCTAGTGTCC
(+)AAGCCAAGTGCACCAAATTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.