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Mouse element [ mm497 ]


Position: chr12:52,604,945-52,606,338 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Scfd1 - Coch

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCAACAATGGTCCCTAAGAacctttgaaacagagcatttaaaaaaaaaatcacaaggga
aaaaggctgaagtcattagcaaagaaaatcccaagagggaccttgctttccccagcagcc
tctccaggcctgggagcacggagcatacccagcttgtacccagagagaaaaaagttttta
tgaccttacaaaaaaagttacataaacaacactgtcccctttgttggttctccctcctcc
ccaaccttacttttttttggattgttttgaaatagataattttactgatccagcagccaa
gaactgtggctctgtcttgaggatctgttggatgtcccttggcagcactgtttgtttgcc
taagattattcatgtctgctggggacataaaaatgaacccagggttggagatcgctgcac
ctgaatgcatttgttgaagctgacgcacagatgggtctcaggagcctcagccttctcact
catcagctcccttcaactgatcaagctcctgcttgatgaagatacagaaatgggtgtctt
tacatccgtgctcatcgagtaaatggtacacagaaaggagatgccaaacctgccagagac
cagagtcaggaaggcaaaaagaggagagagagagagagagagagagagagagagagagag
agagagagagaggtggagtgtcaggcaaaactctgcaagagcgctcagtgcttaggagct
actgagccaggaaagggtgtgccacagggagagaggagggaagctacaagaggaaagttg
tctcagacatgcacatacctcgggaaactgattagttccagggctactgtcccctcctcg
atcttctgtctccaaggagagatttccagatgttcagaccaaccgggaggaaatggttac
aggatccatgctgttctgaagcgaggctacgttatgcaaataatcggctacaacctggtg
gggagggaacttgaacagcacaccaagctccttctgctttgatgtaaatctgattgaaat
acaagtataggatagaaaacgtctacagatgtgccctcctcagtccaaacacacaaaaca
agggaccttaagagagacaaccaaaagtaaacttccttcaaataggaacacggcccacag
aaggcctttgtgatctctgaaaaagaaaggctaccaaatcacaaggctgtgagcgggggt
tctcctctctttaatcacagccactcagaacagtcatttttatattaaatgtcctttcct
tagcaaaaagataaaaaaggaaatctttgagaaattatatgtagcatgtaatgccagctg
ttttttagctccacgctatcaatgttcaattcatcgatgcaatagcttcaacaaTAACTC
GAGCCCTTCCCTTT
Primer
(+)CCCAACAATGGTCCCTAAGA
(+)AAAGGGAAGGGCTCGAGTTA


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