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Human element [ hs478 ]


Position: chr10:98,714,616-98,715,729 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LCOR(intragenic)

Timepoints:
e11.5

This represents an exonic ultraconserved element.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAAGCAAGGCCTTCTAATaaaggagtggtcccctcacccatccctccctacctgtgcaag
tcctgctcacatcagtttccttccatccaattaggcgacctgggagacccagccagtacc
gcccagacggacttcggagtggtgatggggtacctccaagaagcttacaggatggaacca
gggaaggttttggacactccacatcactcaaagttccactggctcgatccctgcagatta
gtgaagaactactgagcagaaaccaattgtccacagctgccagccttgggccatctggat
tacagaatcatggacaacacttaatattatccagggaagcctcttgggcaaaaccacatt
acgagttcaacctcagccgtatgaagttcaggggaaatggtgcactcagcaacatcagtg
accttccttttcttgcagaaaactctgcctttccaaaaatggcacttcaagcaaaacaag
atggaaaaaaggatgtgagccattcatctcctgtagatttaaagataccacaagttcgag
gaatggatctttcttgggagtctcgcactggtgatcagtacagctatagctctttggtaa
tgggttcacaaacggagagcgcgcttagtaaaaaattaagggctattcttccaaaacaaa
gtagaaaaagcatgttagatgctggacccgattcttggggctcagatgctgagcagtcta
cctctggacagccatatcccacatcggatcaagaaggagaccctggctccaagcagcctc
ggaagaaaagagggcgttacagacagtacaacagtgagatactggaggaagcaatctcag
tggttatgagtggaaaaatgagtgtttccaaagctcagagtatttatgggattccccaca
gtacactggagtacaaagtaaaggagaggctgggcactttgaaaaaccctccaaagaaaa
agatgaaattaatgaggtcggaggggccagatgtttctgtaaagattgaattagatcccc
agggagaggcagcacaaagtgcaaatgaatcaaaaaacgagtaggaatactgtagagtgc
caattactgtacaaACTGGGTGAGCACTACTGCA
Primer
(+)CAAGCAAGGCCTTCTAAT
(+)TGCAGTAGTGCTCACCCAGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.