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Mouse element [ mm471 ]


Position: chr6:88,984,670-88,986,247 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tpra1 - 4933427D06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTGATCCACAGCAGAGCAGAggaggtttccaagttggcctgtcattctgtctctgagagt
gacccatggcctttgccctgactccaacctctgaccttagcagtgttttcctctggttcc
ttctccgacactttttaggcacatgtaagaagcccaggactctggggacaggttggggtg
aggcgaggcaggggtcagaaacagagccagcactgagatctttgctgaggctctttctgt
ctcatgtggggccatctaggtgctttgagctttgggctcatccttaagggaccactggcc
tccccggagctgctttctatagagaggtctcactgtgttctttatgaaccctgctggaaa
tttagaaataacacctcagagactgtagcagagttattcccacttttagccagggacaag
atggtgtcgggacaatgtgcctgacttggaacctgtccggtttggaagaaagctaatcat
ggtcggagacgcagaaaggccgaaggaagagaggaaagtgcagcctgacaagagaagtct
gcttgggaacaggagggaggagggcagggaggaagggagggagaagaggagggaggagga
gagaagaggagagcaggtggcttatatcaccagcctccactccaactatgccttgtccca
ggctttctttctttctcctcatgccctgcctgcctgcctgtctggttgtctgtctgtctg
tgctccgttctgtgtctctcttccatcctgcctgtatgtctctgctttactcagcctagc
caccctggcatcactggggtctctgcctttttgcctgcagcaagctgggttttttttcct
cctctgtctttctctctctgctcttcatggttgtcggtctgcatgtcttcttggggtggc
tgggtggctgtctgtccatcctctcatctcaggcagctggaagcatcccctgcgttcatt
gatgtgtggttgtgagattccctttgaatactgcagcagccagttgctggttgccaaggg
aacgggtcaggagaaatgggggaaccgaggggggcatagggagccaggcggggggtgtgg
gcacgcttttctgttttcatcttctttggtgcgttccttttccaaagcatagagaaagga
tggcaatttaaaatgatttttcaagaatcaacacggcagaaataatgggtcctaattgtg
ctggactaaaagccaggcagggagagtggcagcttcctggtgcccagagagagctaatgg
ccagactcagagtgtggagccacttgagggctaggagctgctgtgtcaggtccctgactg
gcattgcccaaggccaccctccttagtccttgctgagaatttaggatttaaagcccagaa
gtctccacaacccccaccaagcaggagaggcagcgaggtgaccacacacaggagtacagg
cgccctgctgctttcaagtgagaagggataggcacggaggcttctctaggctactgcaag
ccctggacattctccagtagcttcaaagaaacggtcttggtctcctctgctcaagctgAG
TTCATCATCATGGGCACA
Primer
(+)GTGATCCACAGCAGAGCAGA
(+)TGTGCCCATGATGATGAACT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.