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Mouse element [ mm469 ]


Position: chr4:89,122,026-89,126,774 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGCAAGATCTGGGACATCAtggacaagctgtgcctgaagatggaaggcaagatggtcag
tagggaagagggcagtcaagtgtgcaactctctcatgagtgggaacgcctctgtccaggt
tctcccagcacaatgatacagggattgatagtgtcaggagccatcactacagggatgggc
ttcacaaaagaagcctagactacatgaaagttgagtgggcaagggggctcaggtaaggat
gcttgcctctgatcctgaggacctgggttcaatccctggaacccacatggtggaagaaga
gaagcagcccctacaaattgtcatgtggcctccatatgccatggtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgttagctaaaataaataaattctttcttccccacatt
gcttttggtcatggtgttttatcacatctatggaaagtatactaagacatttaccaaatg
gaatatgagttttatagacaagaacacaaatgtatatgaacaggacaggcctttggtata
tacttgtagttacaccaaacaggcagtagaagtaggagaatttacaattgagtccagcct
gtgctaaggagtgaccccccacattggtatgtttgtgtgtgcacacgtgtgcccatgtgt
gtttgtgtgtgtatacagttttatagttatactaattacaggacccataaaataaaaagc
atatccattaacagcaaaactattgaatgaattatcatttatctatggaattaagtatat
aaaatttgaaaaactaaaataggatttatatgtgtatttatggagatctgtatgacagtg
ttatatgaaagagaaagcttttataactttgcatttctttttttataccataatcctccc
ccgaaattcaggaaaataccccatgtttcattatgtatgtgcattcacattaaaagtctg
aaagacaaagaaggaacagttgttagtggttgtgatgtatcaagtccttttatttgtata
catttttgcaagataattttaaaaattgtggatccatctattatttccaaaaacataaaa
acatgaaaagataaattatatagtatgggaatgtactagctaaggatggttgagaacaag
ctttgaccttatttatttattttgagatcataatttaaatacaacatttctcctttccac
tttcttcttccaaacccttccatatactccttctgtatacttccatatactccttccata
tactcctcactacctatccatatactccttccatatacttccatatacttccatatactg
cctatcttcaactttattgcctcttgctttactaattttattatatatgtgtatgtaaat
atatatatatatatatatatatatatatatatatatatatttgtaaatataaactgttcg
gtctgtataatgttacttgtatgtatatttttagagatgaccatttagcactggacaacc
agttggtgtgctcttccctaaggaagactacctctgctgctcctacctttcctcagctgc
ctttgtgtagggttgaggcatctgccctttccaccggccctgccccagtccagtttggca
tgtcctttaatgttatcccttttcagctcatgtttggatggtcatgttggcgagacttta
tgagtgtagcttctgatattacttggagacacaaactctctgatcctttggctcttacat
tctgtctgtcacctctttttcaatgttccctgagccttagcttgggagtgtttcttagat
taatctatcaagactggctctataacttttccttttgattagttgtgggtttctgtaatc
attttcatctgttgcaaagaggtgttttcttggtgatcatgaagactatatttatctgtg
ggtataagacaaatgtttatagacggctgttaaggattatgctggtttagttagtagttg
tagattcttctccaataccctgatttcactagcattgagttgtaagctagcgttctagca
ccagtcatgttttccctgttgttacatggatcttaataccaattagagagctttggttcc
tgacaacatatgtgtgccaccactgaaccatcggggatatcatgctgtgctggtcagtgt
tgtggttcattgccatgtaagactgttggtttctgtccttctttggaagcttgcatggct
tcttctggtaccatgaaagctagtcctcagggagggccattcaagccaggtctagctcag
ggctctctgggcccagtttctgatgtgcatgatgtcctcaggaatagggacttaccatct
atctgtggagagcaacaaagcaataggctgtatgttctggaagtctcttctacaaccttg
gcttttttttctttttcccaaagagaagagctgaataccgattctcggcctctaggtgta
cctgaatggtgataaagggagtgagtgctgggcattattaaaaacacccaaattagaggt
cgtgggaggtcacctataaactctctgtttatactggaagcatttaactgactagaagaa
aggctatgactcagtccaaggtgacacagaaggacattagcatgaccaataggaagcatg
aaaataggagctcctctgtaaattctagtggcgagttcctaggcaggctgtcttattaga
aggaggtagagagaggcaggcgtgtcttctggacttggtcttgagacacaatagaggaag
gaaggagactgaaagctttctggaagttcttagagcatcagttaggggaagctggctagg
gtgggggaagagggaccacttgagtttatctgcatcatcatgatgccttttctttattca
tcataatgcttttcagtgttattttatgttacatgttgaacatttcttcctgactagtca
ggctttcttttacagttacaagactaaacactaagatttcacttgtaaatataattcata
gagacgatttaaggtttcctgatagtgctttcttttcttagctttgaattctccagatgt
gtgatctgctggagtatgcctccactgaccttctagggtcatttgtaaattgtcatggcc
agttggttaaggtttccagacagatggtccctgccctcagtcttttttttttttaatggt
tctatatgaagtactgatcatattggaggctctacagagctgttgcgatcatggtccatg
aaagcacaaattgttaagaagcaaagaacttccctgtgtagtgtctggctcctgaaatga
gtgttccacttttatgtgcatcatatttggagttgagcttctaagacagacgacttttct
ctttctgtctcctgtaagtcacagtgctaggagcactgtgtgtttactggcccaagattc
cgccaatgggtgtggcttgaagttgagagtttatgaactgtgtagcttctgctattgtct
gaagcatttcctctcttgtctaagagtttcatactttctcaggcaaggcaggttttatat
ccagataaatgtctgggttttcttactcctagggtgagaagagtaggggaagtgggctga
tgggtggcagttgtggtattctctttctggcagggattctactgtgggaggaaggtctgc
cttctataaaatattaaaataaaattaaaagaaaagaaaagccagaatgactataactat
tctcagtagaaaaataattcttattgctataaagtgaggaaaatagcaataacatttagg
gaaagaagctgtaatcattaaaaaaaaaaggaagataaggaattggtcacagaagagtct
atgagaacagtgaagttcagggagatcacttcatttttttgagttgtcatggaaacagag
agaatgatagtttcatgccactaaatcaataaaacccatttttgttttgctctgggagtc
accaagcatactgagctctggtatatagaaagccaattttcatagcatgtaaagcctcat
cttgtggtaagtgacttgaaaagcacaagagccagaataaaagcccagagtgtgtgtaca
ggaggcagaataaaagcccacagtgtgtgcacaggtcagagccagaataaaagtccacag
tgtgtgcatagggggcagtggcctcaagtaagattagggcctcttcttggccacctgctg
ttctgtgtcctgtttctctataaatgtttgatgccatgccaatttgtttggtttttctta
ataggtctgtgtatcatttttgagataaactcagtgtaaactataaggcaaagacatgtt
cgaatttaatctacatataacacccagcatggagagaatcagaaaccaagagcatggtgt
actcagtctaacccacaggttatggtaagaaccatttgaacatttcttggtcgggattgt
tctgcttttgtgtgtttcttctgtcttttggctgtgagtgacctgccgatctgtacacat
cagagtgccaggcggcgtcctgtgctgtccaagttttcccagatactttcttgagtcaaa
gctgactttcattcaaatgtcatgctgtcccctgcaacagttcacagtctatgtagactc
cacgatatgtttgtatgtatgtgggtcaggttcttttcacagctgtcaattctccagatc
atgtgatctgctgtgaattttccacccacagttcaaggatgctttgcccATTGCTTTGGC
TGGTGTCTC
Primer
(+)TTGCAAGATCTGGGACATCA
(+)GAGACACCAGCCAAAGCAAT


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