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Mouse element [ mm436 ]


Position: chr3:121,995,833-121,997,185 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Dnttip2 - Bcar3

Timepoints:
e11.5
e13.5

Negative for enhancer activity at e11.5. Positive for palate activity at e13.5 (data not shown).

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GATAATTTCCTCGGTGACAAaagaaaaatgttccgactccgccgggactcgaacccggaa
cctttgaatgccttcagcctctagaagtccaatgcgctatccattgcgccacggagccac
ctgttggaggttccgcgcatctgccgtattaagctagaggcaacggccctgctcccgggc
cgacaccatcgcggccgcctccgtcgccggagcccacccgccgcgcctaggtcacctcca
acggtaacggcgaggccggcgagcgcccagccgcccgggaaccgccgctgctcagctcaa
gggccgcggctgcgggccgtgggtcgggaaagcgcagcgggagccagtcgtccgtggccg
actccgcctgtccctccccggctccccgcctgccccgcaaccccgcctaccggtgtccgg
aggccgctcccctccggcccgggccgccgaggctgcaggcccagaccggccgttgcgccg
tcgcgccgggcacttctgtcgccacctgcgagaggcgagggcgagcggccgcgcccgggg
ctacgaggcgaaggcggcgacccatcgcggggcccccgggctcttccctgacgcctggac
ctgcggctgcgagtgcgggccgaggcgacgtctgtgtgcgtgcttgtgcgtgtttatctg
cgcggggcttcggggaaacggggtttgggttgcatttcgctccccacagacccagagccg
aatttctgaggtatccgggctctggtggcctgaggggggcgacgcgccccgcaccgaggc
atcctcccgggagctttatccactatgccgccgccgccgaggagcggccgagccgcgcag
ccgccgatgcccgcgcgcgccccacgcgcgtccgagtgggcggcctctggaggcggacgg
cgcgggtggggatcgcgcgggtgcgagcgcctcggctgcagggcgcgcggccgagcgtga
tggcggggtccccacatcccccacccgcccggtgccagcgctggaccccgcatttctttg
ctcagaagggcggggtcgccgcgaatctgagcggcggcgtgggagggagtgggtcttcgg
ttccctaatcccctccccatctccatcagggcgaccccgaagcccgagggaagagaacta
gctaaataataaaagcccagttgctaggcaacggccgctgccagacaaaagcccaggctc
cggctccaatcagcgtgcggctctctcgaccccgccttcttaggactcgcgtggtgcgac
ctgacgctgacacctctgcaccaaaccagcttccgtctgtgcccaccgggtggtctctgc
caggcagaattggCCATCAAAGGATAGGGTCTT
Primer
(+)GATAATTTCCTCGGTGACAA
(+)AAGACCCTATCCTTTGATGG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.