Mouse element [ mm426 ]
Position: chr5:38,216,908-38,220,459 (UCSC browser)
Source: Lawrence Berkeley National Laboratory
Flanking genes:
Msx1as
-
Stx18
Timepoints:
e11.5
Additional information about this enhancer, including optical projection tomography (OPT) data of embryo #3, can be found at www.facebase.org
Expression Pattern
| branchial arch (7 out of 9 embryos) | | ear (3 out of 9 embryos) | | eye (5 out of 9 embryos) | | facial mesenchyme (8 out of 9 embryos) | | genital tubercle (5 out of 9 embryos) | | hindbrain (rhombencephalon) (7 out of 9 embryos) | | limb (9 out of 9 embryos) | | midbrain (mesencephalon) (9 out of 9 embryos) | | nose (9 out of 9 embryos) | | somite (7 out of 9 embryos) |
Embryo 1
|
| Embryo 2
|
| Embryo 3
|
| Embryo 4
|
| Embryo 5
|
| Embryo 8
|
Fasta sequence
gtggGGACCACAGAAGACCTTGTAaactgggttcgaacaggctgttggggagttgggggg
gggggggcttttctttatatggcctcttatcccagggcccaggctcgcggctccggggga
ggtggaggaggtgattggcggctcaccgggactgtgcattgatgactgccgggctctaat
ctccaggaaacacaaggggctgccgtggccatttaggggtaattatccgagcacggaggg
atagcgaattccctggccttttaactgggcgcaataaaaagctgtagattaggggcgacc
agattaaggaaaatgaattactttattacccagacggcgtccggggtctggagggagggg
ttgggctgcggacgccagagagatcggagcctcacatctgcccacagggcctggagaaat
aggaaggcctggggcgggttcgggaatactcgcttctgtgaaatgtctggatttcttacg
tttctgaggctgtgaggaggcactgcgtagggcttgggactcaagctcatttaggcccag
ctggacgcccgctgtactgggtcccctgaggtttgttccatgtgtatgggaagtagaagc
cataccgtcccgttttaaagccctgcaaacgaaagttaagcgacagtgtaggccaaatcc
ttagctcgaagcctagaaggtacggagaactgtagtttaagaactaattaggcagttgct
agatcatctcgttctatagcgtcagccgatttacactctgcgctcggattaaaacagaaa
tggaaataaatctcccaaatggcttgctttagtctagtgtttttagtacgaggagtgttt
ttcaaaaagtgagggttttcagttattccacctcgatccccaacttaaaataatttcctt
ttgggagcgatcggagaatccaagtagctacgatctttttcccgggaaaaaaagtgcata
acggctaaaatacgtgacacgcaactgtgtagacaacttcagggactcgtgtactggccc
agagtcttaattcctgctttaggaccgagggggcctcgaaccccaagaatggggccccag
ggcgcaccggggtctccagcggaactcacggagtgtgcagcagtcggagcaaagaggcct
agcctcaggccggggagggggcggcctgagaagggctgcatcgctaattgcggggataaa
caatctgtcacgatccctcagcgcgcctaataggcagacgaggatgttgtttttaggcgc
cagcggcggccggatcaaaggctgcagccggcgcaggggcccttgaagtcgcgcccctgc
ctccagggagcaaaacgcctgcgcccgcagccctgagccctgctttcggcccctgggctt
ttagagtaggtctcaaactccactgtctattcttttggggttcggtgtgcatttgggtct
gcagggattcggcgcgcaggctagcgggttgcaaaggttgcaagagcgcttttgcagagc
gcaagggaccggactcgatggcttccagagcgcaggacccatgctaaactctacccaagg
gctgcgcaggggaggaaaatgcaccccaactctgagaaggatgtctgagaaacaaaataa
aaacccggttccccagccatgtggctcattcccgaaaacggaaaggcatgcgtttgggat
caatgagagcaggcaacctcggagctcatttttgtctgacctttgcggatttcctggcca
gtgggttaagcgagctgacagcccaggctgggcctgttatctcacggcagcgctaaccgg
aggtgctgctatcccgacgcggtcgctgcaggcagcggagaaaacggaccgtaattcatg
cctggcaagggcagggctggcccgcggcagataaaactctaagacaggctctctgcttgc
agcctgctcgacttttctcccctccccctcgctctgtctcccctagtctcctgcacccta
tatctcgcctgccttcgaataaattacctttgccggttcagatcctaaagactagttctg
cgatcaatttctgggccgctactctccttggtggcctttaccccgcaacccaaaatgctc
gtttgactagagtataggacaactggggtgtgtgatagcttcgatatggttcctagatat
tttctcttcccccctccccccgccagcagaaaatcaacttgtagaggaattcaattttaa
aggcaactgttactacctgagtatctatctggccctgggtttgaaaaacttaagggttgg
cccttcagtactgcgttcgttgtcacccccatcccactcccttttctagtgcattttgtg
gcctctgtccagaaaccccgcatacattttttttatgtgcggctcagtgggatccgccgg
caattagctagccccaaacagtcctctttaatagaatggatgtgctatggaaaccgatta
cccggaacgatttatttttgtggggattcaccaatcaccgggagggcagcggagggagag
agaagaagtattttgtccctgggtgggggtggggtctgatggttggtcagaaagcctcgt
tcagggggatctgctaacctcccgagaggccctcccttctctgccatctccgagcctctg
acccctgccttcaagcaaggggctagaagttatgtttgagaaattgcccgggaatcactc
gttcagggaagattttaaagcttttccaggacaaagcgccacagttaagaattagaagaa
tcttcagttccagaaaatgcagaggcgataaagattttttaaaaaaaaatgcttcgggtt
tccaaagactagccgaactggtggagtccttagcgctggaactggcgccgccaaaggaac
ccttcctggaaggtgtttttccctttcttgagaactcattgacttcttcagaggaagggc
cccaatcctgcggattcacctggggaactggcagctagagtctgcagcttcttgctcttt
cccgcccatcccccacttgcttagggtcccactttctcggctgggctttcttgtgtcttt
aaattcgtgggggttgagggtgaggggccagtatccgcggaagagggagctccctcttca
aatggcgcaaattaatgcgatcgggacttgagggcgcacttggggaagatgaaagcggag
gcctgccggctcctaccaggactctataattatagataatatatctcatttcaaagcaat
tagaccaatcaggcgtaacgaaccactttgctgcctacgaataacaaaggcgcacggtta
tttaagcctggagatgtcaggcagaccctaaggctccaggggcccggacccaagtcctcc
accccgtctcggcccaccgctgtacccgagttcccctctctttgcccgccgacggagcac
cggtctcggcttttacccatggcctcgggcgtacggattggagggcattggagaaacttg
gtgtcaggcctctggtcagaagttttgaaaactttagctaacttattattttCTACTCTG
GAACTTCGGAAA
Primer
(+)GCGATCGGAGAATCCAAGTA |
(+)CACCGAGCGTGTGTTTCCGAAGTT |
|
