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Mouse element [ mm381 ]


Position: chr4:89,118,823-89,122,232 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTCTATTTGCCTGCCTCTTTCtatcttttccttatatacacaaagacagaaattattag
ccacaattttatattgcttgataactaattccatttcatttgttgttttttttttttttt
gcatgtgcatgtatgtacttattcgagttggtttgtatatgtgcatgcagaggttgactt
gaagtgtgttcctcaattgctctttgatttatgttctgaagccatgtcttgatgagcctg
gagcttgcaggttggttaagatcacttgctaatctgcctccagagatcctttgcctccac
ttcccaatcactgggattgcccagttggtttttatgtagctacagaaaacccagttttcc
tgcttccatggcaaacatttcatctactgagctatatccatagctcagttttttttttaa
tattatttggctatgattatcttggttgcttcaaaagtcaaattcattttttttgtttgc
tgttgttttttgtttttagaaacagggattctctgtatagccctgctgtcctggaactca
tgctgcagatgaggctgacccttgaagtgagagagctgcttgcccctgccttcttactgc
tgagattaaaggcaagtgacaccactgtccagctaaacctattcttataacttagaagtt
acagtgaacatattacaaccaaagaagtatatagaaaggcagctgattctcactctacat
tcaaggaagagttataaaaataccagggactttggcagtccccttaacatgttatctagc
agtatgaaaattgtggttaataagttctgtctttgtgaaatataaaagagacagaaacag
cagaatgctatactgaaagatgcctctacctcacatctcatcttgtgtgtgtgttggttc
ttatgttaactctttgctctgaatgaatactgccacctagtttgctttattgctgtgata
aaacaccatgaccaaaaccaacctggaaaagagagagagtttatttggcttacttatctt
gggtcatggtacacagagagtagccaaagcaggactgtactgtagcagaggcatggagga
atgctgcttactttcttgcttgctcatagcatgctgagcctgctttcttatacaaagtag
gaccacctgcccaggggataccaaccactgttgctgaaaatatttaattccaatccagac
tttctaccttgtctttggccatttggttcctggataaaagacacacacaacctttatatt
tataataagacttaataataagagctgtggagatatctatcctctatggttttatatcta
tttactagacaataatcccattatataatttgccctgcatgtctgggttactattaactc
caattagccaacccacatgaccattattttaagattccccatggcagcttcttctctctc
cactttctttttgtcccacctccatggttctcttccgaccccatgcccaggaacctcaaa
ctctgcgtgtgtctcttctgctcagctattggctgtccacatctttattcacaataaggg
ataacttggggggcaaggccacatagtgtcacctgggtgtatgtgtggtctctgggagca
accagtatttagcatagcaaaagaccaaacccacagtgagctgggccctcccacatggac
cattaaaatgctgtcccacagacttgcttattgaggcaatctctctcttcccatagacat
ctaggtttgtgtcaagttgacaaaaaccgaccagttcaatgggctcattgtcaacttgaa
acatgagatctcaacttgactcccgaatctcatgttattattatcaaaatataaaacata
aatatctttaaaagttccatagtctttaaaaaattctatcactccaaagttctatgtcat
ttttaaatattcaacatcttttaaaagtctgaagtctttccaaaacccaaggtctcttaa
cggtggactcctgtgtaaccaacaataagttataccatatttcaagagacaagaacttgg
gcataatcacaatctaaacaaagcaaagccaaactcctactgtgtaaattaaatcctgta
gctcaatgtactgcatcttggatttactcaatatctgggttccaaagggcttgtgcagct
ccaccttacaggctgcacacatagcctggctcatagacgtaggttggccccacaccctag
ttgctgctatactaggtgcccatctgactgacttttccaatactctggagtctccatagt
tcacaccttcaccagtgacctctcctactgccaagtttctgctgctctccagaatcacta
cactccttcgagaccagtttcatctggtagactcttgaatgttaacaagtttgaccacca
agcacgagatgtagccttgcctccagctatgtgtgtgctcaccctgaggaagatttaatc
tcattgatgctggtctcatcttaatcacggctgatgtgacagccatgagcctagccaatt
agcatccattgatccagtaaagcaaaagtttcactttagtagttctgctcttttgttgca
gctgatcctacaaccccacttgaccagaaactacatattcgtaattcaaaatatcatata
aactgccccgagagagtctttgctttgctctgaaacttcacaaaacagggttctatcgtt
tgtattatttttccagctctctcttccacgtttccaccgtagctcaccaagctttgagca
gtcgacagcttctccagcctgaaattccaaagtcctttcaaagtcttccccaaagcaaca
cggtcaggtttgtcacagcaatgtctcataaacctggtaccaatctcaattgtgattgtt
agtttttgtcaacttgacagaaacctagacaaatctgaggaatcgcctccatcagattgg
cctgtaggcaagcctatgagggaattttcatgatttattttggagggcctagctcactgg
gaagaaagtcctgggttgtataggaaagcaggctgagcaggtcatggggagcaggccagt
aagtagcactccttcaagggccttgtttcagtttctgctttcagattcctacctggcgtt
tctgccccgatttcgcttcatgaaggtactacatgattatatgttaggactttattggga
tcaagatattctggaacaaagatttgcaagatctgggacatcatggacaagctgtgcctg
aagatggaaggcaagatggtcagtagggaagagggcagtcaagtgtgcaactctctcatg
agtgggaacgcctctgtccaggttctcccagcacaatgatacagggattgatagtgtcag
gagccatcactacagggatgggcttCACAAAAGAAGCCTAGACTACATGA
Primer
(+)TTTCTATTTGCCTGCCTCTTTC
(+)TCATGTAGTCTAGGCTTCTTTTGTG


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