Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm379 ]


Position: chr4:89,105,875-89,113,247 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACACTGGAGGATGCTGAAAgaatagtaaaatctaaattactgtttttacaatgaatgca
ttctattggttgaaattaaacaacattggattttaaaatatcaactttctttttcacttg
ttctgatgagtcaaaaataaaaatagagtcctcttaaaaagatcctgaacacccgtgagg
gaggaaacccatgcagggcagtggggccagtatacaagctaagacacacacattgcactc
tgtgtttccacattactgctccccattccacaccacacagcctttcctggaagagctgtc
agaacaggatataatttgctgatattcttctaccagagaggaaggttgcataattagacc
ttcaccatctgaatctaatcgaacatgaagcaccaccctcaggattaaagggaggggcga
ctgatggggggagaatggatgggaaggaagaggaagttgatcccattagcacatggaatg
gtagtctctgtagtttctgaatgacttatgacctgcagaaaatgtcctttactgtggctt
gggatgggatgaaaggcacctcaactattgttatacttctgggtaaataaactctggaaa
gaaagaatgcaaaatgttctgaatatagataggaatggaattatcactgttgtctcactc
caagggaatactttcattccctaaaaaaagctttgaaatgaatgtagcattagatatgaa
aaaataactttagacattgattactgtcacctccatccccccactaacagctatttctga
taatttataataaattttcctcatacttaggtcaaaattctcttataatcacccatgaca
tattcctctttagtcttagaccaattatcttaaaagtattaaatcgtctaatctttgtgt
gccttaaatatattccggcagtactgagatggtgggaaagaaaaaaaagattgtaatatt
taaattccaaggaagtttggcaatgatgactaaagtcctcaaagcaaagcgattcagcag
cagcgtacacacacacacacacacacacacacacacacactcacacacactcacacacac
accagattgttggagaaacaatgaaccctccaggaagatgtgccccatttaccttgggaa
atcaccaagaaaatcataaatatatgtatatttgatttggattcaatgcctagcaaatgg
tgattacagctccagactgtagaaacagagtgaacacatgatgtgattcggatgcatcag
agcttgtgatttcctaatggatgaattggacactaactcttctgagtcacaaggattctt
ttgccctggcagtgtggagctaagctagaaggtttatattaattgcctgtgacttggttg
ggtgggttcctgctagtccatttaaggggagggacgtggagaacacattccttagaatgg
ccacagactgtccagatgagaaggactctgaaacgtttatgtgacagtatcgaagggcta
gagtggtcctagaagactggattgtatggtcactctctggtctcttagcttgagagtgag
ggagacttaacaatgctttttgtttgttttacatctagcatactgacaggaaaacaacaa
ccaaaaacaacccagtaatttaaaagggaaaatggtgtgaagagatactgatgcagaaaa
ataaaacttttagctatttttttcctcaaaacctacccacatctccctctgagtttactt
ttgttctcactttacagagtctttctgtggtaagggcaagggcgagagagagagagccag
gagaggcttcactccttaaggtccctccagagtcatttctagatggttatcatcatgcca
catgcacttggaattcttggtgattttccaagctaaacagggcacatcttcctggaggtt
tcatttatttctccaacaatctgaaacgaaagttcttgtaaatgaagtcaaaccaagagg
cttcatgccttggaacgcaaaattcattggaaatttaaaaaataaaaccctgggcttcag
agatccaggcatttcagattcctgctcacattccctgctgagtgcctttcccctttcagt
catgccttattacagaaagtgtgtacaggactatccaggcattagtgcggatatgacatt
ctcttaaacttctggtctcttcctaagactggactagttagtccaggagattgttctgtt
cttactattttacagccatctgagaatatcacaaaaccagataattctatgagaatcctc
aatgcagtataagactaaaggcgatcagagtttcctcaagagcttcacgtaggtgtgatg
actgtgggctgcttcttggacgccttattggacgcctgctattgagcagatgtttttctg
gaaataggatgcagtggtgactagaacatttcctccgagtcaccaggagatggaggggga
gagggttaggaaggatgaatatgaacgcaatgtgttcttctatttcttctttttgagata
ggattttagtagccctggctagcctggaacttactatgtaggccaggctaacttccaact
cacagagatccacctgtttttgcctcaggaatgctaggcttaaaggcaatgcaccaccat
gctcaacacagtgaattgttgtttttccttttcattatttttctccatttatttaattat
tcattcattcactttacatctctttcctctcagcatctgcctcacaagccccttcctctt
cccctctccttctcctctgagaagggggagcccccctgggtaccaacccagcctggcaca
tcaagtcattgcagagggtggccactttaggccccatattccctactgctaggagtttca
tctagggtcacccccatagactcccaggagcctcctctatcctaggtctctggcatgtcc
tagagattcgaacctcccatcccaccccatccccccacctgccttgagctcctgtcacag
ttcattgataagcacaaagcattattctaggagttagaacatgccaccaaccatacccac
tgcctttccatccattgcacccattccagggtcattctcttctttaggaatttctgtatt
acagcttcagctgtagatagaaaggaggctgcccagcaccatccagtaaagcatctctta
cagtctttgttggagcaacggttgttcccttttctaccatgttcaaaaaatctccgagtg
tagcatcataaccaacttctgaggaactctgcagaattttctcagctatcaaagatcctt
caccatctacattctttttttttaaaagatttatttatttatttttatttatgtgagtac
actgtagctttcttcagacgcctgagaacagggcatcagaccccattacagatggttgtg
agccatctgttgctgggaactaaacttaggacctctggaagagcagtatggtgttcttaa
ctgctgagccacctctccagccccacctacattctttgcatagtcattgcaggaatgttg
agtgctcctttagtaatttctatacctattttctgatttccattagcaggctttaatgaa
tccaagactggcatgcactgaagcagaacacagccttctctgagaacaatgctttcttca
acatctgctcttgtaacactgagagcatcagtagctctgtctttcttctcattcacttcc
acaccacttgtccctccaactgaaaggaaataaaacttgagacctgtgattcatgtaata
tatgtcaaaaagcccaaagagttgtttgtgaactttgaaaccaggggctaaaaacatagc
acaacaggccaggacatgcccgggccggcccatcgttacctgtcctgactggcctggtac
ctccctatctcccgcccttctgagagtctgttaatgtttaaatgaaccaatcatgtgaaa
ccgtgccaattcctcctccagccccaccccttttctataaaagtccctagcttccaagcc
tcagggttgaaaccactgtctcctgcgtgagatacgttttgaaccggagctccgccatta
tggctccaccatgtggtcaacacctctgtctcctgcgggagatatgtgtcggcccggagc
tctgtcattaaactacctcatgcttttacatcaaggtggtcgtctgttcgtgattcttgg
gtgtgcgccgaacagaaattgagtgggggtttccccactaggttctttcactaccttcag
cacagctcccccatttgcaagtttagcaagttactcgttcagcttttccttttcatattc
actagttgtgatgcctagctgctcagtgatttcttgaatacgtttttcaatttgagtgtt
gtcaccttttcctttcaaaatcagggtgccatctttgttaacaatgacctatccaacttt
tcctacatcatgagcttgaacatcttcaagatttattcactccctcttccccaaaagcca
aaccaccagtagcaatagccacatattttaagctgattctttctattgtccccaaacccc
ggagctctgactgctacaacctgaagaccaacttttaccatgttcaaaaccatcgtgctt
agagcttctccatcatcgtcttcaacaatgatgaccaaaggcttccaatgagcattggca
gttttaagagcaggcacaatgtaacctggagactagaaattttcttttcactcaacagaa
cataggcatctttggaatttacaattttgaccttttgatatattaataaaatatgggtaa
atatatcctctatcaagtttcatttcagtaacttctaattcatcatccagggattttttt
ccatccttccctgtgacgacaccctttcttccagcctttgtcattgcatcagaaatgatg
ttgccaatgcttgtctccatttgcagaaatggaaggaacctgaccaattccttcaggggt
tgtcccaggtttagattgttcttttaagcttagcaattacagcatcgacagccaccatca
cacctctctgggtctccactggattagcctttttgctgatcctttcaaaggccttcttgg
cagtagaacatgctagaacagtggcagtggtggtgccatccccagcctcttcctttgtgt
tattggcaacatttagctctcatgcttttgtatttctcctgttaatcagttgactttgca
acagtgacctccatccttggtgactttgagacttccccaactctgtccaataatcactgt
tcttccctttggccccattgtaacagctagcacatctgctaacaggtctacattctgaag
cgttaaggctcgaacatccacaccaaattttacatctttggcataggatccagtgagagg
aagagccaggcgcgcaggactctggtctcatctggcaaaggactgtgggtaatcgaagca
cttctgagaggcagtggtgggagcgcacatagtgaggcaggctttcagttgccagtgagg
actaaatttggtttttgtatgttggaagttgaacctcatgcatgccaagcacatatagag
ctcaggcttcactggtgttatatattatgacattctgctcatttataatgtagtccactt
tagtctaaaacctagggaagtagtcacagagtttgaacagcccgttaaaatggcatttaa
gtagacacaaagttaagtataccagtacagtgttcctttgatgtgggaattaaaaatggg
gtgggagacttcacctggaaaatgaagactaagttcttggtgctatgagaaaagtaaaac
agggaagacaaaaatggaaattgctcacccatttgcaagttacaggaagaggcaggttac
agttcatagcatctctaatctcagggtgattggtctcagagaatgaaccacacaaatagg
aaaaagcaaaacaaaacaacaacaacaacaaaaaccagggagtgactcagctctagctca
ggttgcttctgcgcctggcatgacctctgctgttgtcctcggaccttgcttccctcctcc
tctgtcgttgtggagaaacaggaaggaatgtttattaacaaggctggctggggccacacc
caaagcaatatcagagttttacctctcctgggcctgggaagaggtccaaagatcaagggc
agcttctggtttgtatgaggcaagagcaaacttagagaatatactgcttttttttttttt
gagccttgacagatggtctgctgggtgtgatctcatctattcctcctggccatcctgagg
cttgtaacaggtcaccagaaccgtaatccccaaggagctttgcccaagatgatggaagag
caatggttcactctcagggttgtgtctccgtggcagatgtctttcactgcggggttagca
ccccagctgggatcctcaggtcccttatcaacagcctttcccattttatcttccagtcca
atcttgtactcgtatcttacgggctccagtaatgggtcacaccttatgtgcttgagaggg
gaggggagaaggttgagcagagaggaagtaaagagataaggggacaggagacagagatac
acagagacacagagacacacagcgagaaatagaaacagagagaggggaacagagagagac
aaaggcagagagtcaaagacagagagagacagtgagcaaaggagatttcttttaagatat
ttttagtatgtttcctgcctcaccgagtagggaggagggatacaatttttttttattgct
ctgaagggtataaaccattccaacgggtgccaccctgtgtgaaaatttcagagatgccaa
taagccacttgagacagtaaggctcgtgcctttctgttctcattccttatcagtctctga
cttgcagaggaggaatgctggggtgggggggtggtggggggaagaaagaacttcaaggtt
ttaagagggtggatttgtgcccctgaaataaattggtacaagtccttgcttaggctgttt
ctccacctttccttcttaatagctacacacgtcacagtcagacccttgtatcagaacagt
gaaacttgatcccctaaatccaggcatcctaggacatagcagttccacctgtgtggtctg
tgacccagcagcaagcaactgtccttgaaattaaccagtatggccaccagtcctgtgcct
attttcatcacagcagctgattaatatagaactgcttaaatgggtcagggaattcatgaa
aatgatttgtttaaacaattgtcacttattggcacttaccgagactatggctgccttcca
gaggcaatcagagaaacctgaggacgtgccagcATTGGAGTGTAGCCACTGGG
Primer
(+)CACACTGGAGGATGCTGAAA
(+)CCCAGTGGCTACACTCCAAT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.