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Mouse element [ mm378 ]


Position: chr4:89,098,407-89,106,169 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATGATCTGCGTGTGTGTGGTgattgttccttccacatcaagggcctcggaggatgacgta
gcacagctttctcctgcgctgacatccacccactcctccagttgcacctgcagtttgcag
cagatcaatggcttggtattctactctccaactagtactagagattggtatcaggctatg
gtatcccgggatatttccacgtggcatctctgttgaccttgtcatttagtttcatggcga
ccttcttttggactgtaatatgcacttagtaaggtagagcaggaatgtatgctgtttggt
aaggcattttatatctcagatagaggaatctgtttattgataggtcagtgtctaagaaac
aaaacttctactctcaaggtaattatgaattagctattaggctttcttaagttcacagag
cataatttataacataaaacctgtcatagaaagtgctcactttaatccattctatagata
ataattatttttaataaaagaaaacatttacaagaggaaacaaaacagtctgatggctta
acttaatgaggaaaataaaacatgcaaacacctgaaccagaaacctggagtgtctaggtt
ttctgactttgatagtttatcttttcaagttaattcaactaaggtaatttcagatgctag
aaaggctgctgtaactttgtctgagacccaagtcctgaaacttgctctgtagacctggct
ggcctggtctatatgattttctctgcctcctggtgttgggattaaaaatatgcactacca
ttgtctgggcataattcatataaaaataattttgctttgttctaataccacattttgaat
aaaccactgcctttcccactgtgctacggagctgttttgtttattaaatatctcctctag
gtatagttgattcttcatccagtatttctgataataacccatctgagcatggagttttat
gataattgctctattatttgtctgtgcatattacttggttacttataggcattgtgttag
cctttcatagtgacagtctctgcagttatgatctagtcaagctatagcaaggcatactat
acagcttggtcacagacctgcaagattcaaacctgcagaagtttgaatttggctttgcac
attcaatcattcttttagagaaataatatactatgctacaatcgcaacttaactttttca
tatacaaaggggaaaaaactgaacatatttaagatttagaaattcacaaagggattagtt
ggacatttctaatgaggcctacttactaagtgaatggagacaagtgcctgactcatgggg
ttactgcttcttgtcgtggctacaccagcactatagagcagcaacagattagggtacaaa
tgctagaagaaagcctaggttttactcagaacgagctctccctcttccttacccgcttcc
ttttctccttttcccttttcttccacttcctcttcttccttctcctattctttctcttcc
tcctcctcctcctcatattcctcttttcctcctcctctttcttcttttacaacagggtct
cactatgtagctctgactgatctggaactcattatgtagatcagacttgagctaaactgc
ctgtctttgcctcctaagtgctgggattaaaggcatgtcctaccgaggtggccctcagaa
ggccttctagctgttaagcagggtttcagagtctctgaaagttaatcaaacgaaaagcac
agtttgacaatctaaatttctcttcattttattaaaccttgtacccaggagattaatttc
cttttttttccctaggaaggagatctcttgtttgtgacagtctcaatgatatataactag
tttccaagcatacagagcaaatccgaggcaatcatttgttagtcataaagataatgcaag
caatggaaacacgttttcaggtcacatcaccagacagaaactttgcatggattctttcct
ggttcaagagttcactcataaggcctactttctctatcagctggctcaacctgataagaa
cctgaaataaaggttctttccaagcttttatttatttgtccttgtgacataagggttgtg
gagattagtctgtacagagacgtttctggttggtccatttttctttggagtaattgtcta
tctcggtttgacagggtaaatagaattatttaagtcgctttcaaaaatttcccaacaact
ttgcgtctaacaagttttctctgagtatgtattgaggtcttgtatattcagccttagatg
gtctagtgataatatgattcaagactagagtaactaagagaaagaaatatatgcccataa
aaatacgttagatgtaagtgagagtgggacttttatttttctattcaatattttccagac
ttttgttcttcccaggaacttgtcccaaaaggtgttcatttaaagttcactccagaaatg
gtctgttaggcctttgttcttggagaactccagtggattggaattgtggctgtcctggaa
ggataatggagtgtaggagtgcccatgttcatgcccacgcccaacttatcttagccactt
cccttccactcccatccagtgccccttctactctgccgggtggatgccaattgctgaaca
gtctctatagcttctgtacttaatctttcaattccctgacaactcggccaacaacaccct
tctttcctatgataagtaaacttactgacttccctaaatcctgtctcttcccctctaagt
taatcattaaatgatatgatattatggtacttcataaattctacattcttgtattttcag
gatatgttgaagtagacatttaatctggtctgttattttatctactgagctacagctatg
aattggtcactcttttccttagagggttgcattaattctctggtattaaggcaacagaga
acattattctttggactagcttatcaccggtgcatgatcaagtagaatcttaactgtgac
tgaggatccaagtatcctttcttgtactgagtaaagtgtgaaacacaccaggattttttg
ttgttgttgttgttttttcaaaacacggtttctctctatcgccctggctgtcatggaact
cactctgtagaccaagctggcctcaaactcagaaatccaccttcctctgcctcccaagtg
ctgggattaaaggcgtgtgccaccacgctggctacaccaggatatattcttggacaagac
tgcgaattttatgtgcacttccagaagtctcagaacacaatggtataaagagacagagac
gtgctctgtgctttcttcttctagtgtctgcatgctatgacaccatcattatgcacttca
tttttagtcaagagcttagaatatgctaacactgttgtcaatcttgctctctcaaaatat
ggcctttagttactataaatatttatttagatagggggcatattatatatgtaagtgtta
taggaaaaaactgaaaataaacactgcactcgtagcactaatttaaaacatttttatcag
tgcttcaatgcctcagtgtgccttccttatagtccagttctctttctagctctggaacca
atgtctgccttgagttttgttcagactgttacctggttagccttagtttcccatatgtgt
atgtgttccaagataagctcttaaactgtgcttctttttgaagctgatgtaaatgaaacc
ctatagcataaattcttcttaaacttaatttattgagagtttactctgagactctccagt
tttcatgtatacaacttagttccttgctgtcagtagataatatccagttgggggatttta
tggcaatctcttgtcttgattgggttggtcctattgtattatgcattttactgttatggg
gcatgtggccttggtcattcctatgcatggtggtgtgttaggtttctcattgtagagaca
aatgcctgagaaagaaggtttaaagaaggatgtagagagaatatcttgtgtattgtatgg
gtgcatcgcctgtcaactaaagaatagaatagaagactagaataaagggaagaatagaag
gtgggacatgcagtaggcagaaagaattctgggatagaatggggcatgggggaagagttg
ttgggggacggattgaggaaaacagacctatggtacctgagcagagaatatagattagta
taaatggttattttaaattattagctagtcagggaaagagcctagctctatggatggctt
aggtagttgtaaatatattttgaggctgagtcattattttggggatcttggggctgggag
aaaaacagccttttacaaagggaagatttagtctttggcttacaaacgtaaaggctctgg
tgatgctttgcctggtatctctgcttctggggcagttgcgtggcagagtatcatgacagg
gaagaactggcccagaggagaagcttagtttctgcaaagagagagagagatcagaagaga
aaagagagagggcgggggagagggatggagaagcagaggttgatggagagagtgagggag
aagaagaaaactttggacaaagtccttggtgacctccttcttccatttaggaaccatctc
tgaaagtttctgaatcttgaaatgctatcaaattatgaatccaccaatgggttaatcact
gattatgctatatgtgtgtgtatgtgtatgtatatatatatatactcacatacacacaca
catatatatatatatatacatacacacacatatatatatatacatacacacacacatata
tatacatatatatatatatgcatacatacatacatacatatgtatacacacacgtgtgtg
tgtgtgtgtgtgtgtgtgtgtatagtctatctgcctacctctcttaggacacacggggaa
agcaaggaccagtgttatgaacaatctgcttaaattcaaagtgagctggtggtggagtcg
aagtttgaactcagacatctgtcttcagactactcacatctaaccccagtatttattgct
ccttcattttaaagaaaggttttgatagagatttaaaggcacttgccaaagaagcagaga
ttcaataaagatcacacttactaatgccatttattttattatatgctaagtatcttatag
ttctacttgtgaagtattaattatagacgagcaagttcacacttcatgctattatctttt
ccttacacgttatcagctgccaaaatgtaaaaattgctctttcagtttctgcttttcatt
tatgcttgatttaaatttgtagtagtttttcctctaaagctgtgagtagacaggagaaag
caatgggctttcacagtaaaacagatctttctctgtcttgctattttgtttaagcctgct
gaatatggttagagatatgcaacgcttgtagaacaatttaatttgagtactaattcacat
attcaacaatagatatgctagcagataatatggacaactggcattttgcagtccaggtta
tgacctgaaaaggacaaacatggaagtcagatgggtaagcagcatcctggaaaaccttgg
atgagtcttgtggctagaagagtttcccaccacatgacgacatttttaagaaagaaaaat
aaaataaaaatttacttaacaaacttaactttttactgattctttgtgatatttcacatc
atgcacccaaccccactcatctctctgtcccttcttacccaccctccacctctcgcaacc
tcccctgtaaatgcaaacatctcactgtggaagctgtcgtgtgtcctatagtatacaatt
ttgtccacaccttttttgcttacaaatgtttattgcaatggtctggttcgaggcctctgc
ttctgctatactatcaatactggagtctcatcaggactcctcttggatatcttgttgccc
tgtgtgatggagatcttgaaggtttggatctatgggatgagccccttcacagccccagca
gctcatagatggggtagatgtagggccaattcaaggccccagatgtgggcctgggtggta
tctgagttggtcagcctgtcagctctcctgtgcctgcaccactaggaagagtactatctc
cagtactatcctggctagctcatctaatgccacagccaacaaggaggcagagccatctct
tctgctctcataccctcaggactggttcacaccccctcacctcttccctcctctacaaga
gtcagttctactgcgctgctcaggcaagggacagggcctgctctcccaaatgctgtagtt
agtgagggacaggaaggaatagctctcccagtctcaagaccacagggccagctctcctgc
ttgctcaggtggcaggagaggcagggacatctctacctcactcacaacaccacatggcag
atgaatgacaggaccagctttctcatgatcatactctcaggccagctcacccacacctca
tgtaatcagggccagctctactgtggttcttgggcaaggtgtggagcccactctcctact
cttaagctttcaggacagctctccctggatgctcaggtgaggggtggggccagttctgcc
tagccttcagacatctttttgctgctgtttatttctattggttaagtgtcagttgattaa
gatcatcataccacaacggtagtacggtgataatagtgttagaatcagaaaatcagttta
tttgttttttttgttgtgtaacaatcacagacttagtggcctagaatacccaccttatct
gacctatctttgggaagcttaggcagagtatgcatggtcaggagctgcagctacttcctg
gacttgaccttggttcctgttcaaagttcccaggttagcaggtgcttcatttccttctct
tgaccctgccttaataaaacagaagtggccttcaaccttcaatttcttcttgtgctttcc
tctctctgactctccttgatactatgtatctctcttaattctctctttttcttcttctac
cagaaaaagacactttgaagagacaatgtaattaggagacacccaaggggataatcttgt
tgaaaggtcagatgtggtatgtagtatctacctttattacttcactgggcccgggatcag
agaaatgactcagctgttaagagcactggcttaccttccaaagcactggccagaagatct
agaggacctcaagtcccagcacctacaaggcagatcccatctgtttgtaactccaggccc
aggcagatcaggtgccttcttttggcctccacaggcaccagaaatacatgtgctgcatag
acttgcatacgcataagcaaaacacttacttagacacagaaaataataaatacttcactg
ggtctatgtttaaatctaaatctaacaatatcctgtatattcaactcatttacacaaatg
tatctttttttgtgactacaagatctcacacactggaggatgctgaaagaatagtaaaat
ctaaattactgtttttacaatgaatgcattctattggttgaaattaaacaacattggatt
ttaaaatatcaactttctttttcacttgttctgatgagtcaaaaataaaaatagagtcct
cttaaaaagatcctgaacacccgtgagggaggaaacccatgcagggcagtggggccagta
tacaagctaagacacacacattgcactctgtgtttccacattactgctccccattccaca
ccaCACAGCCTTTCCTGGAAGAG
Primer
(+)ATGATCTGCGTGTGTGTGGT
(+)CTCTTCCAGGAAAGGCTGTG


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