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Mouse element [ mm377 ]


Position: chr4:89,092,028-89,098,985 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTTTCTTCCCAGCCACCTTcatgagcagccagaaaagcatggaactccttgagttgcat
gttacttcagaatcacctccagatactcacactgaaattagaagctggagaaggcggcta
atgtcttgtctcagtttatagtttatagtttatatttcccttgatatacatttatatttc
ctggacccacctgccctttgtagtaatcttgtcttaatgcttatgatgaaacgtaagaaa
aaatgactttggatttcttctaaagcaatcgctttctttcccccaccccctcatctctct
ctttctctctctctctctctgtctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttcttctctctttcacacacacacatgcagaa
atacacacacacacacacgcagaaatacacacacacacacacatacacacacacacacac
acacacagagagagagagagagagagagagagagagagagagagagagagagagagagag
agagagaggactgtattcttaagtagatagtgtacaaattaagttatcacagaaaaagaa
agaggagctaccaagaaagatgaactgaagactgcgacagagctcttctctctgcccaca
gggtaagtgggagagagtgggagtgaaaggggaggctgagggactcctggctgtcatgta
ctttgtcagtattttttaaagggtcagttggttcatgaaccacagctggccactgcggtt
acatctcagcacttaagtatgtttggtcaggcccacaaaatgccatttgcctgtttggat
tttgaaccaacacttaagctccaagaaatttaaagtaacaggtcagtaaaacaggcaaga
tttatccagattgagccatgctgtcagcaggagtaatgatggatgggcactgctttctga
caggactgcttttgctgaacctgctagtatttttttgctattgacctgactttcaatttg
tcagttgtcatactgaataattaattaattacattattttccttttttgtttgtttgagt
gggaaggactttggccctgtaattaatggctgtcttgctcacatctcctggatttgggga
ctacaggcttcctgcaatcatgtaccatgactcgttgattcatgaacattcatgcaggac
attaatagcatcatttttccacctagacctgcattgcctgcattattctttacatgacat
agagtttgtaatggattctttctctgtatctatcatccagtgtctacaaacaccatggct
ttaaggcagtggaaatcaatgcagagttgtaggggtggtaaattcagtcaggatatcagc
aggctcttgccatccacacaggttatataggagaattttctgaacttccagtgtcttcag
gaagttttcatctggaagttacctcactgtattttctgctatctcttttctctcagcctc
ttctctgtgtgcttctataaggacatttattattggatttcttgcctactgtgactaact
gagttaattcatcttaagttaattcttaagttttcatataaaaatcatattagtaaactt
ggaggattatgatatggaaatatttttggggggtgatctacccactgcattagccagatt
ggacagttctagaaaatacagacagaatggagaagttgaagttgtagccattcctcaggg
taaagaaatgaaatgaagacaagaccaaagagggaacttttatctcaatcctggtttgct
ataagaatcaaataaccttaatctttggacttccacacattagcaaactgagtcagggaa
tacttagttcctgtgaatcactaattcaaccttggtttactgtgtaatgtggttaattgc
ttgaccttggccatggatccatagatcttttaataggtttactgctttcagttgactaaa
attacaaccatcgaaaatactctgtgagcacgggcattttaatgaatgtagacacatgac
tctgactcttttttttcctgaatgagggggtgctactaagatcacagaagatgtgaatct
aggtaatgctcaagagtagacacagagccaggctgcatgctctctgacaactctgccatg
ccacatgagcaccaggaagccactccccctaaaaaaaaatctagtcatgggattataaaa
cacttcacagacagtcctaagtccaagtgaaggtttcagtcagagtagtcagagctatga
ggaatttgaggcaaatcaaatattcgggagtgtagtagcacgtatttctatatgctcaat
aatttagaaatcttacttatgcatcctgacagattacatcctgcattctagtgcttccta
ttgggaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt
gcagagagctatacagacaaccatacccagtctcatacacactcccgtcacaactagggt
ttagtgatgtgaactaaggtgtgggctttttgtttgttcctttgcttttgtttctctttt
gctgtggcacgaaatccagggcagtgaaaagcccaggcagggggtttgccagagtgtaaa
cctgggcagccttgctcagctcttggttgagtgtggagttgttggcggccagagggtggt
tgcctggagagagcagcctgacattcttgcacgctgacatcaagctgccaagttgctgcc
ctctggtgagtcaacagcaaaaggcctacatggtccgagagtggctgtccaatcagaagc
tgtggtggctacctcagaaatgtgtccaaacctcagcattctgcaggcttcaaacagctc
cttctgagaaagaatgtaggcatgattaaagctacgagaaacacacaacctgtaatcaca
gcaacagtgagatagatcccgcatttgcttctaaggccagcttgttggattttagtcagc
ggaacctagagaacctagagaacagattgaagacctgattggtggactgagagttttctg
tatactgagatcaaggtgtccttgaatggtactgctggtctgtgacagcagtgggctcca
ctagcaggtattgcaactcagcagcaatatctccagtctgccatctctttcagtgagaat
tcatatgcacatgtgtatactgaggtagaaacttatggtagagcctcttctctcgtgtcc
ttagtagaggtggatgtgtcttccactgagcagggatgtgatggatgatgcaagaggcag
attatttgcttagtgcagcacaagcctgctcaccagctaagagcagagtcctttccacag
cactgccaccatatggcactgccatatcatagaggccataaaggggaatggcactgtaaa
gattaactagattttgcttggcaaggtcaggcatccagataacatgctgtaaatggcaag
aaggagaaaggggatctatatgacattggtggcagtggctttcctcacagcccagcccat
ctgatttggactgtccattgtcctcttaaagatgcccaagaaagctgtatggttttgtgg
gtaaggcagtcttgaagctttgcctatgtggaatggtaatgtcactaagaaagagacagg
atttggataggatggggacagtagcataccaccaactctaaattccccatgagcctgagt
tctcttccatgtgacgtctcctacaaggatggcgtgttctttcagcgccctttacctatt
tgtctattcattcaaagttatattttctcacatccaaagcatcaggtatcaggggtttac
tgctgttttttttattttttatttttttccaaaagactaatagttcacacaaagaaacag
aaaaaattgatatacaatataaccaatattttaatatataccacaacagaataaaaactc
ctgtcaaatgctgttaaaatttgaatcttaaatgtacccataggctcacattttgagcat
ttagtctccaactgatgacaatatttggaaagtttctgtagattttgagattggagctta
gctgaagaaagtgggtcactgaggtgcctcttctccatgatagtcttctgttgctgtctc
tgcctgccatggtgtgagctgagtgcttctgcctctgcctcaatgggctgaattccctga
aaccatgagctgaagcaaatcctttttcttcatgtaatctgttactgttgcatcacagca
atgctagagcgattaatttaaaatctaagagctttcatagaatgtgtatatacatgtctg
cattgtggttcaaatggaagtttcactgtaactccattcagaagaaacagacatctagac
agatgaaatagcagctaggagacaaagaataaatctagacattttgactttatatttgag
tccttaagtatccagttatagacttaaggaaagctgtttgactctgtggcatccacagac
ataagtcagttcatggctctttaaatgagggatattgggtgtgctcgttggtgacgcttt
gtatgtagaggtggctgtacatgtgaagactgccaaggtctaccatcaaggggcaagaaa
gtgagtaactgatattagaggtttctacagcctttctggattttattattgagaaacaaa
attctcagtatttcttggcttaaataacaaggagaatttgcatagctcatgcattttgca
atgtgggccaggcttggttaagatagctcctctctgttgcatgaagtgcctgttggtatt
gcttaaagaacatctgagcagctgagcctcttcattcctctgtatcttgatgtgatctct
ttactggtccttcaagcatgagaccttcaggtagcattaaaaattatgtggcctatatta
gattgcctagagtgcagtttcaaaagagtgagatagtcagagctgtattatcatttgtaa
cctgcatctggatgttgtataaccttgcttgtactagagtcagttagctggggtggttgt
gaagtcctgtctaggttcaggatgggcatagagtctttctctgaatgtagacattccaag
gttcaagaaatcttgtgagactaaaatgctttaatgcaaatatttaggaaattgattggc
ataaaagtaacattgctgtaagaatatagttggagtattggaaactggtttcatctccat
gctctctcatatataaggtcagttttttagtctcagtttccaggactagtattttagagt
tgttaaagattaaataaagtatataaatatcttggtatatgaggctggtacaaatctcaa
ctcatgtacaagaattgaggttgttggttggccagaaggaaggcagacagctggagagta
tgaagggtagattgtaatatgcatttgtagctgatgataagttggtcaaacaatagtatc
tcaaagttacgtgatgtgggcatagttcccaactatctagagtctgccacagaatcctta
cagtaagtgcatgaaggattgactgttgacatcccctatatcagttgaggaacttcagga
tcaaaaaggataagaaaacttccctagttgtcaggtaacaaagacagggaaccttaaagt
tgtatgcaacaatctatgttccacatatgagagaacaagtaatatttgtctttctgggtc
tggatggtttctgtaaggcgatgagttctaattctacccacttccctgcaaatgacataa
ttttattgttcaaaggcaggatttgaatcaaggcaatgatttttaaaaatcagaaccata
taagaatagcctacctttaaactgaacactaaatttttttttcagcagggtaaacctgtg
cttaaacttgcacttcagaaagttatactgaatatagcttcgagattgccagcagctaat
tgccagtagcaattgctctagcctaaacaaaaccatctaatagtaaagagccagtacagt
acggataaggaggacattcaaggaaattagtggcaatcatgtagactgctgagtggatat
atagagcgttagaggcaccattgcagtgacaggtaatctctgagtgtacgtactgcatac
gtacaccataacccatatacatcatagcagggctccgagtggaaaagaaaacaaccctag
ggtgccttctggccacaagcatatttcctaggcatttgtactctcagtctagactgaaaa
caaacaaaacaaatttctctgaaatgctggaaaccctccccacttgaagctctcagatct
cctaccttgtaaatctagctttcagattccatgccacacttcctttcccacaccccaggt
ccttggaacagggatcacaatgatctgcgtgtgtgtggtgattgttccttccacatcaag
ggcctcggaggatgacgtagcacagctttctcctgcgctgacatccacccactcctccag
ttgcacctgcagtttgcagcagatcaatggcttggtattctactctccaactagtactag
agattggtatcaggctatggtatcccgggatatttccacgtggcatctctgttgaccttg
tcatttagtttcatggcgaccttcttttggactgtaatatgcacttagtaaggtagagca
ggaatgtatgctgtttggtaaggcattttatatctcagatagaggaatctgtttattgat
aggtcagtgtctaagaaacaaaacttctactctcaaggtaattatgaattagctattagg
ctttcttaagttcacagagcataatttataacataaaacctgtcatagaaagtgctcact
ttaatccattctatagataataattatttttaataaaagaaaacatttacaagaggaaac
aaaacagtctgatggcttaacttaatgaggaaaataaaACATGCAAACACCTGAACCA
Primer
(+)ATTTTCTTCCCAGCCACCTT
(+)TGGTTCAGGTGTTTGCATGT


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