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Mouse element [ mm376 ]


Position: chr4:89,083,402-89,087,829 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGCCCACATTCTCTCAGGTgatcaggaggccctgggtgtgctaggggtactgtggcgtg
gagagtcctctggtgtcctagatgcccttggccgggttcaagcagaggatggtggggctg
gccccgacctgaatggatcccagcctctggtcgggcatggttcctcagtccctgttcctg
ctggcacaagaccctccgtgattctgtagagctggagttgcgttgcactcacttgtgatc
ccgaggagatccagatatcctgttgcatggagagcactctgtagcccttagcagcctctg
ctgggctcagaaggacgatggccttccttgatatccttaaagcaaaagccaacattatat
ttcactaacaattccatttagatgtttagaaatcatgttggttcaattcagtataaacat
tgtgtcttagtgtggtcctggggctacccacataaacttgtctaagaaccaacttagggt
ctaggcttctgagtttctgaactatgtacctttccctgctatctgaaatttcaataggtt
ccaggttgactcacacattagaagattgtaaccattgtcacacaggtcaagttgggagat
ttaatcatttctctcagtcaaggaagtagcagatgactttccaatatctttggtcctggg
aagccactcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcc
tttcctttcctttccttcccttcccttcccttcccttcccttcccttcccttcccttctt
cccttcccttcccttcccttcccttcccttcccttcccttcccttcccttcccttccctt
cccttcccttccctttcctttcctttccttttctttccctttcttcctttcttcctttct
tcctttcttccttccttccttccttcctttctttctttctttctttctttctttctttct
ttctttctttcttttaatttatttattttcatttatacgcattggtgtttttgctgcaag
catgtctgtgtaaaggtgtcagatcttggagtaacagacagtcatgagctgccatgtggg
tgctaggatgtgaacccgggtcctctggaagagcaatcagtgcccaccacccctgagcca
tctcgttagtccctattgtaatgtctccaggactctgtcttcttcattttcaccaacact
gttgctgtcatgtgttgagcatttcccatatgccagatactgtgcgaattgcctttcaag
catgatctccttcaaccctagcagtgggtttaatgaatgttaggaacaggagcctcagtt
catacagctgccacaggaccgacctggaaagcaaacctatggctttcagtgatggctctt
tcatggctgtggtgacctgagaggactagctgggtggagagggaacgtctattatgcagt
gtcagtcatccagatccttcacattcaagcctgtatttgcttcatgcaggaagccatgtt
tctaccttcatattgcagctatttaaagaaggacctcgggagcttgatcgtcagatgctg
gaaaagctcttattagggtaggctcctagctctagctagggtagctttaaaagagattat
ttttcttctccattgaacccaagttttaggcagagctagttatatgacttatggcaaata
aataaactgcactgtggcactgctcattaatttgtagaggcaaaggtagggggaggggtg
gggaattcatggaggggagaccaggaagggggataatatttgacatgtaaacaaataaaa
tgattaattaaaaaaagtatgataaggacaatgcagtgtggatgctgaaaggatttttat
gagtgttctatgacttgaatagtatgattcacttaaaacactgcatcccaaagttgagca
ctctgaaaataatcttaaatccagagggtagaaattagatgcaaaacattcaagaattag
ttttagggaagattgaaagcttctagttttaataacattctgttggaagcagtgagctgt
gccctgtcttgtaaggtggggtaatggtagccaggattagaagaagcccttgtggatagt
ggagaatgctggagattacagctgaggtgggggaaacctgaagaaaaagaggtcattgca
ttgccattgagctcatgtttaccaaaagaaggcaaagaggtcattgcagagattctgact
taaaacatcatttctaattaaaacataaataaagattatcactaaaaattgttatgttta
cctgcataatagtaggaaatgtatgtatgtgtggttttgacatctgcaagattcctacca
gatagtttggataatggtctgaaggacaattaaagaaagagatttaggggctaccgtcat
agactcaggacagttcagtgatatacaggcaaattaagaggacagaagagaaggcaattg
gttctatgaacacaaaattatccaccgtcttctggggtgcatgttaaaagtagcccggaa
tgactagaatacagaaagaaaaactgcttaaaggaaaccgtagagtgaattaactccaga
gatgataaaatacaaatactttcaagaaatagacttcaacaaggaagtcatttgagtgtc
tcttattatgtgggcctgggccggatctttaaggaagcaaaattgagggacagtctccct
caagaggctcaaggtccagaaatgcacacctcttctgcttctgacacaggtatgcatggc
aagttaagttggggtgagagtaattttctgggtatgaggtagtaaatctgttgcccctgc
ttggccagcatgttggatttctccccgaagtctgcttcctggcctacgtggagatcttta
ataaagcaatggcagaggtgtgtgggtggagtgtggcaaccaactgaggccgcacacaca
aaggttcaagggttttgggtggctgactcaggactgtctgaggaaaaataaaaatctcaa
aggcaaggagagccgttaaaaacaccccggaccacagtcatacttgcccacaaaatatag
gtctgttactctaatgcccacgtattgcccgactttaataagttccaataactttaccat
ttactgttacagacagactgaaagaaaaataatgatttactaaggccaaacaacctcatt
ataacattataattctagatttctacgtagacattgactataaatgaatgcaggagtgta
ttaatgaaatgcagccctcaaatggaacctggctacagtttttttttttccattttttat
taggtatttagctcatttacatttccaatgctataccaaaagttccccatacccactcac
ccccactcccttacccacccactccccctttttggccctggagttcccctgtactggggc
atataaagtttgcgtgtccaatgggcctctctttccagtgatggctgactaggccatctt
ttgatacatatgcagctagagtcaagagctccggggtactggttagttcataatgttgtt
ccacctatagggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggagccctgtgatccatccattagctgactgtgagcatccacttctgtgtttgctaggcc
ccggcatagtctcacaagaaacagctacatctgggtccttttgataaaatcttgctagtg
tatgcaatggtgtcagcgtttggatgctgattatggggtggatccctggatatggcagtc
tctacatggtccatcctttcatctcagctccaaactttgtctctgtaactccttccatgg
gtgttttgttcccacttctaaggaggggcatagtgtccacacttcagtcttcatttttct
tgagtttcatgtgtttaggaaattgtatcttatatcttgggtatcctaggtttggggcta
atatccacttatcagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcact
caggatgatgccctccaggtccatccatttggctaggaatttcataaattcattcttttt
aatagctgaatagtactccattgtgtagatgtaccacattttctgtatccattcctctgt
tgaggggcatctgggttctttccagcttctggctattataaataaggctgctggctacag
ttctaagtgagagttcttctatgctgacggctctcagagaaaatgctagtcctttgatga
ggactacttcttgctgctctgtgcagcacactggtttcagtcagggcaacggacctttca
gcgtgctttccgttggtttgactgtggcctgaggtagcactcagactgtctttcaccatt
ttagtcattctgtggttcccttagaaagAGCTGAGGCTGTGAGTAACC
Primer
(+)TTGCCCACATTCTCTCAGGT
(+)GGTTACTCACAGCCTCAGCT


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