Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm374 ]


Position: chr4:89,072,503-89,077,616 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGCTAAACTGGGGCATCACtttcctctccatgactgctttgaatagacataagttttcc
tgatacagtcttccacgaggctccaagaatgaggttaaactctataaaaagaaaattgac
caacccttaaagccatccttgtgaactttaaacaccactgaatgtacatagtaaaattgt
ccctgggcacacagactcccaggcttgggtggagttcacatcggctgttttgctaaaata
aacaaaaatgactgagaactttggattgcctttgtctgaacttgagtgtctggatggatc
agcaacagtagtgtataacatacctgcttgtcaaaccaaggagaaacccaataggcatgt
gtttcttacaagtcaacaaaaataatcacacgattgtaatttgtggtagccatttgttct
aaaaagccacctcacacattttccagccaaataagtcttcctttgaaaggcatgggatga
agaacaacattaagtagaccattttgatctctaatttcaaaagatgacattttaaaattc
aactgtaaatctaatgagacacactacaacatccagaacacatttgagttggtttatgaa
actaaaaacaaaaacaatgaatttcttaagtttttaacttaaaaattattattatattga
gacaacagttaacattaaacatttatagatggctagatccaaacttgaagggaacatttg
agttaaaagtagttagcaaacacactatatgtatgtatcaaattctgaaacatggaaaaa
gtagttgaaaaaatcaggcagattgtgtaaatgcaatatgaatttatacacacccaattt
taggaaagctacaggaaggtcccatgcgcattctcttgagtgacgcccttgctttatatt
aacaacactgaccatctgacttcagtatcctctttactcacaacttggtcaaagacatct
cataattactaagtgcctcagaaacgatttctaaggctagtagcatgaatttattatgtg
ctttactgggttttgagcatcattgatctctgggttttttagatctgatctcttagtgat
accatgaattcatagtagccacaagtgagatgtgtaaatgtcattttcttatgtttgaaa
tttgctttttcaaaagcaaacaaaaatcgactgaatttagtcaatattggtcatgttata
gtgatttgagcacataatttagattgatgtcaattaaatgatgtctgtagtctataaaaa
cgcgaactcttatagctgcttcacttaaggagtggttcctctgtgtatacaatttctcta
agaatgttggagatattaattagttgaactttgtgaaatgcattagggcattcttttttt
ctctctctttttttaattaggtattttcctcgtttacattttcaatgctatcccaaaagt
cccccatacccacgccccaatcccctacccacccacttcccctttttggccctggggttc
ccctgtacaggggcatataaagtttgcaagtccaatgggcctctctttgcagtgatggcc
gactaggccatcttttgatacatatgcagctagagacaagagctcctgggtactggttag
ttcatattgttgttccacctatagggttgcagttccctttagctccttgggtaatttctc
tagcttctccattgggggccgtgtgacccatccaatagctgactgtgactatccacttct
gtgtttgctaggcctcagcatagtctcacaagagacagctatatctgggtcctttcagca
aaatcttgctagtgtatgcaatggtgtcagcatttggaagctgattatggggtggatccc
tgcatatgacaatcactagatggtccatcctttcgtcacagttccaaattttgtctctgt
aactccttccatgggtgttttgttcccatttctaagaagggacaaagtgtccacactttg
gtcttcgttcttcttgaatttcatgcgtttagcaaattgtatcttatatcttgggtatcc
taagtttctgggctaatatccacttatcagtgagtacatattgtgtgagttcctttgtga
ttgggttacctcactcaggatgatgccctccaggtccatccatttgcctaggaatttcat
aaattcatttcttttaatagctgagtagtactccattgtgtaaatgtaccacgttttctg
tatccattcctctgttgaggggcatctgggttctttccagcttctggctattataaataa
ggctgctatgaacatagtggaacatgtgtccttcttaccggttgggacatcttctggata
tatgcccaggagaggtattgcgggatcctccagtagtactatgtccaattttctgaggaa
ccaccagactgatttccagagtggttgtacaagcttgcaatcccaccaacaatggaggag
tgttcctctttctccatatcctcgccagcatctgctgtcacctgaatttttgatcttagc
cattctgactggagtgaagtggaatctcagggttgttttgatttgcatttccctgatgat
taaggatgttgaacatttttccaggtgcttctctgccgttcagtattcctcaggtgagaa
ttctttgttcaattctgagccccatttttaatggggttatttgattttctgaagtccacc
ttcttgagttctttatatatattggatattagtcccctatccgatttgggataggtaaag
atcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgccttgcag
aagctttgaaattttatgaggtcccatttgtcaattctcgatcttacagcacaagccatt
gctgttctattcaggaatttttcccctatacccatatctttgaggcatttccccactttc
tcctctataagtttcagtgtctctggttttatgtggagttccttaatccacttagatttg
accttagtacaaggagatagaaatggatcaattcgcatttttctacgtgataactgccag
ttgtgccagcaccattcgttgaaaatgctgtctttctttaagggatttttgtgtttcctc
tttaatgtcttctacttgtttagcagtgttctcctgtatttctttaagtgagttatttag
gtccttcttgatgtcctgtaccatcatcatgagatatgcttttaaatccaggtctagctt
ttcaggtgtgttggggtgccctggactgggcaaagtgggagtgctgggttctgatgatgg
tgagtggtcctggtttctgttagtaggattcttacgtttacctttcgccatctggtaatc
tctggagttagttgttatagttgtctttgtttagagattgttcctctggtgattttgtta
cctctatcagcagacctgggagactagctctctcctctgagtttcagtggtcagagcagt
ctctgcaggcaaggtctcctctttcagggaaggtgtacagttatctggtgtttggacctc
ctcctggccgaagatgaaggcccaaaacaggatctttctcagaagctgtgttgctttggc
ctgtcacggaagccgttgtttcagtagtccacactctcacctgtgtagactactttccgc
agagtcccggaaccaaggtggctcccgcggaacttgaggcagaagcctcccgggccgggc
ggacacctgtgctctgaccaggaaggtggcccgttgtctggcgccgaaaatggcgccggc
attagggcattcttgatgaatgtttggggatgtagttttaaacaaacaaaaaaaaaagat
taactctttctgccttatagaaaacataaattcattttctctaatttagtggtcaaaatt
ttttgatgttaccatgcatacagagtgttttggtggttgggatttaagaatagatcacat
ggagtagtaagcataaacaggaaacttttcttaagaagactacacatcactgagatcaat
attcttatacacacacacgcacacaaacacacacatatacagatctctatgtatatgtgc
acatatgtaattcaaaggagtatcttttattgttgattttattctcaatgattagactgt
ataccatttaagtaatgctttgtgttggtgagcaatttgaaatatttcttccttgatatc
ctttttttcatgaggttctttttttttcatgagcatatcataactataatttataattac
attccatttttattactgataaaatcacaaatcagtaagttatttttctttgaaaatatt
agttttgaaaatttttagatagtataaattctacactgtaaaatgtacatcattctggcg
acttcttgacatttttctgtttgacagagtttgattaacttatacccagtcattgtgctt
tgaatgagaaatgtccctgagaggttcatgtatttgaacacgtggtcaacagttggtggt
ggcactgtttggggagattatagaagctttagtaagtacagcctcactggaggaagtacg
tcactatggggtgggcttaaaggatgtatagccttgcctcacctcctcctccccatctct
gctttctagatgcaatcactggtgctggaaaatataaacatgggcaagtctaaaaattct
tgtttttaaatatttgtaggaattgatataatgtatcttcatatgtgtgtttgtgtgtgt
gtctgtgtagccagtagcaagatggctctaccatttttcttgctttacttttgctcattt
ggcaggtggtttttttatggccatgcttagtcagaatctcaaattctgtcaagttctata
atgttcttatagagagaaatcacatcatacaccctggactgtaaaacaagatatatccta
aactctgttccatgagactcattaattcttaagtatgtttaacttaaaggtttgaataca
atagaaatgggtgcatttaaaaaacaacttaccagaattccccctcctcccaaaaaataa
acttcaaaaatatgaagaaatggttttggttgaactatttgaagaacaaaggtgTTTTTA
CACCTCCCCCTTCC
Primer
(+)GAGCTAAACTGGGGCATCAC
(+)GGAAGGGGGAGGTGTAAAAA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.