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Mouse element [ mm373 ]


Position: chr4:89,066,522-89,073,392 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTCACCACTGGGATTCAGGctgaacaaaggagttagattcagtgagttctaactgtggg
tgatgctcaccataatggagaaagcaaacaaagtcatgtggttctataatgctgtttgta
aggtttgggttcagattagtgcatctgtaaagtccttaaagaaagattaatggcagagga
aaagagaactggaggacagactaaacagatgctatttacatgggctggtaagtctggtgg
atcatgtcatgaagaagtcaggatgtgtatatatagagcctcctcagcatttaagggaga
caagaaggcctgggggtaaggatgtggatggagggcaggcatgaagtaaattacagtaaa
taaggaggcacacccgattagcacctcccaaatatcaattagtatcaagttcccatgagg
ttggcttaattaattttgagtgtgtatgtgtgtagtgtatgttcacgtatgtgcaggtat
gaccgtccatgatcatgtggaagacagaggggaatattagatagactgctccatggcttg
ccctcttgagacaagatctctagtttaactcagtttcttgtggattacttcagtctttct
gaatctggggtgtggtgtggtgtggtgtggtgtggtgtggtgtggtgtggtgttttatca
gaaattctaaatgatactgctgttcagtcagataaaaaactccagttttgttcgacttga
cttggaggtttgtggtgtaccacaattgacactaagtttagggtgacagctagttttctg
attgtcgtgagtgaataaaagtgagtcaaccttcactagctagcagataacagtggattt
gaagggtaaggtgctgagttcagttttgagatgttaagatggaccgatcctgttgaatat
caatatttaaagcttctagtgagttttgacactgccaacatggaggaataatattttagg
aatagtttctctgtagtttatttcaagattttaattttttaatttctgatattgaaatat
atttatatcactttccccttctctttactgctcccagttcttgattattctctttttcaa
attcatggcctccttttcctaattgttggtacatatatgtatatattctaaatatgtaaa
tacagcctactatctgtataatttacagacaatgtaacatggaagcggagaacttacagg
gcctcatccttacataaagaacaacaggcagataaggaatgctaagaccaggaaaaatag
ccttccaattggttatccaataccaagtagtcagcctgaaaatctctctctctctctctc
tctctctctctctctctctctctttcacacacacacacacacacacacacacacacacac
acacacacacacacacacacacaccacacacctgactatactctatatgttacagagcac
tgaaagagcccaaatcttcaaatttctatcaactgtcaaacaatggctcttaagtaacta
tcttcataatcccttacttagtctattgcttttaaaattaagttgtagctgtgtgtgata
acacacacctttaatccagtcacccaggatgtaaaggtaggaggttatttgtgagttcaa
ggccatcatggtcttcattatcaagacccaggacatctagaattacacagagagacccca
tctaaaaaacaaaaaaccccaaaccaacccccccaaaatctttgtttccatttcttcttc
tttcttttcttttttttttaaagatttatttattttatttatatgagtatattttagctg
tcttcagacaccagaggagggcatcagatcccattacagatggttgtgagccaccatgtg
gttgctgggatttgaactcaggacctctggaagagcagttagtgctcttaactgctgagc
catctctccagcccaggttgccatttcttaagtcctttagatcccagaaacatgaagtac
atgttggttacttggttactcttcagaacttgaaaaaaagattgtattgctgaagatatc
atattcttgagtcatagaccacaaataaatcaagctttgaccaacctggaagcttcatct
ttcctggctaactttcataatgctacaaggttctatttagagtagtgggggagggagaaa
agtattcgaccattgtacttagctgtgagctccatgagatacaataatgactagcctggc
aagatatgccccggggtgcaatatggcacaagtgagaacaacctatagcttcctgcttat
gtttaaaagttccctttagaagacagaactcatgcctggtattgttaactgggccaaatg
tgtctggctacgtcatagccctaggggagaatacaatattattattctatgtattattaa
attgccactgagatctatttatactgagattagtactgtattctcagcagaagagcttct
tttcatagtaggtggtaattaatacaaagatccacaacttgccaatgtgtagagcgtaag
agatcattcagtggtcagctcaaaatgagatgtctgtatcacacactttctactcaaggg
tcagtaagagcaaaaggaatgggagcagcaagatcataagaggcagctaggggatgtctg
cagtgaaacagtatttgctgggcgtggcacaagggttgcacacatgaactcaccgtggct
gtgactgccagcatggatcagggagaggcctcacgaattccccagttgtgaagatggtaa
tggctgctgtgggagggaggctctttgttgttcatggattcagttaagagactacctgtg
cttcaattcatggtcctacactcatgcacgtacaggcagagctaaatgtttatcaaaaac
agaacacatgaagttgggagggaaagtggtgtgtgtataagaggattttgaagggaagaa
atggggatggcatgtttgattaaagcatacttatatacaatatgaaattcccaaacagta
aaaatgagtcatagtctattatcaatacttatttagatcagttcatggatttaaacaagc
aacctgctaagctaaaatgtgttacctttatgctttagagcagtggttctcagccttccc
aatgctgcagccctttaatacagttcttcatgctgttgtgaccctcacccataaaattat
ttcattgctacttcataactgtagttttgctactgttatgaatcataatgtaaatatctg
atatgctgtatacctgatatgtgacccttatgaaaaaaagaattgcttaaccccaagggg
gtcacaactcacaggttgataaccactactttagatgaagaggtttagggaggttgtgca
agttgcccaaagtagtgcagaatcaaagcattacgtcatattgtatgctttttttttcct
ttttgatcaagttgcacatgctaggcaaaaaccttaccactaaggtacattaccagcctt
tcagctagaaatattggatccaaatgtctttctgcctctaagctcagagattttgaacat
tcatgattagtgtctcatgggtcagaaagtgaaatttttttacacaactataaaggaatc
agtatgatctatgactaatacactttctgcagaattccagattctgtctaaatatagaaa
attcattttgaaaatgaactcagggttcttttgagaatcagggcacttccttaatcatat
agtaagtgggttcgtgtggctttccagtgatcagtatgattgggttgatctaagtgcctt
cccacctttgtccagccccatatgggtcatctacatttttttgtactctcaaaacaggga
ctggagaggatgtgacactattttgtctctgtatgctttgcctatagtctcccagtctat
ggtatgcatgtgtatgcacacatttgtatgtgtgcacataggtgtgtacaggtgtgcata
cactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttttggggga
cagaggtctaagctgggctatctccttcacttgctcttcatcatcttagtttgtgaggca
gggtctctagctgaaccagaactcactgatgaagttaggctggacgaacagggatgtcta
gggatccatctgtctctgcttccccagatctggtattacaaatgtgtgtgacaagaccag
cttttgaatgcatgctgggaatctacactcaggtccccttggtcgtgcactaagcaatct
accaatggagccatctctccagtcccttccagtatgctgtggagacatattcattttggc
atcaattataaaatgagctgttggtagacccagatagaaaagaagtttcagcaccaatgc
tggctttctttgttggtcattacagacatttgctctctttttcttggtaacactggcaag
catgggatgctctagtaagaaacatgcaggtcattatgaagcctgtctggctaagttgat
gtactgaaagaaattacattcttttccatacagtgaatcatgcagttgaaactgagtggc
atgcgtgattacttttgtgagaaactaacttcaatcagtgtttaaaatattcgggctata
ttcaagcacaaagatgtctatcagttaagtaagaactgggtgattggcttgcctccagca
taggcaagtgcaagtgcgagtaagggaacctcatctaactgggagaaggcagtttccttt
gctcttaaaacaaagcaaaacataatgacacataggtttttttgtttttttgttgttgtt
gttttttatttttggttgtcattgagttagaagttaataccatggaagatatcatgagac
tatacagggacaggcctgatggatcagtgacaggctgtggatggcagaagtgaattcttg
ggtccttggtgagatcacggcacagctgactgtgctggagccccagagatggttcttcct
gtctgagatgctcttagttgctctctgaaacaagaatctgaaagcacactaagcaagcag
catcacgaacagcatgcacggtttgtaaattctttctttttagaaggtagaacaacatta
tgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaaagatggcct
agtcggccatcactggaaagagaggcccattggacacgtaaactttatatgccccagtac
aggggaatgccagggccaaaaagggggagtgggtgggtaggggaatgggggtgggtgggt
atgggggacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaaatg
gaaaaggaaaaaaaaaagaaatgctttgtagagactcatagtgctataatttgtcttcag
tacattgaatttcccccaaatactataactctccttttgagcaaattgcttatttttgca
ttcatcaagtttgtgtcatttgcctactactttgtgattttatcatgaccttgtatcatc
tgtactgaaaatattcgctttctattacacacacacccacgcacacacgcacatatgtgc
acacacatatgtatacacatacacaacaaatacatatacacacatatgtgcaaggatgaa
taacaatgattcccttcattttagtgttgaactttatggactcatgtgcctcattgagaa
tttctgataagctataattccttttctcaggccaaagcattactgcatccatatccatat
gattacacatacactagcatataaagagaagatcatacatgtgcatacacagacttttca
caactcagaagtttaggacattagacagcattctgtgtatttcacatttgtccttctaca
ctcatacagtgtgattcagttcactgaattctgtggttgaatgtaaaacatgggttttga
atatatctgtcaatgactaagagtagtaagttaagagtagtgagctaaactggggcatca
ctttcctctccatgactgctttgaatagacataagttttcctgatacagtcttccacgag
gctccaagaatgaggttaaactctataaaaagaaaattgaccaacccttaaagccatcct
tgtgaactttaaacaccactgaatgtacatagtaaaattgtccctgggcacacagactcc
caggcttgggtggagttcacatcggctgttttgctaaaataaacaaaaatgactgagaac
tttggattgcctttgtctgaacttgagtgtctggatggatcagcaacagtagtgtataac
atacctgcttgtcaaaccaaggagaaacccaataggcatgtgtttcttacaagtcaacaa
aaataatcacacgattgtaatttgtggtagccatttgttctaaaaagccacctcacacat
tttccagccaaataagtcttcctttgaaaggcatgggatgaagaacaacattaagtagac
cattttgatctctaatttcaaaagatgacattttaaaattcaactgtaaatctaatgaga
cacactacaacatccagaacacatttgagttggtttatgaaactaaaaacaaaaacaatg
aatttcttaagtttttaacttaaaaattattattatattgagacaacagttaacattaaa
catttatagatggctagatccaaacttgaagggaacatttgagttaaaagtagttagcaa
acacactatatgtatgtatcaaattctgaaacatggaaaaagtagttgaaaaaatcaggc
agattgtgtaaatgcaatatgaatttatacacacccaattttaggaaagctacaggaagg
tcccatgcgcaTTCTCTTGAGTGACGCCCTT
Primer
(+)TCTCACCACTGGGATTCAGG
(+)AAGGGCGTCACTCAAGAGAA


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