Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm372 ]


Position: chr4:89,059,942-89,066,758 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGCACTTTTGATGGGGTTTcagtacagtcatctaggacagcattgctttacagaaatgg
atttgattgaaaccgcctacagcaggtgaaatagccaggtgcccacattacagctctgaa
aatatccctttgtggtaccttgtggttttagtttctgagaaatgatgatgaggagctaca
acagaaggcaagaaatatcaggaatgtctgtttgcctgggtgtattcagtcagaggtaga
gtcctgtttgtgtgtgtaagactggggttttcccccctcgcctggtggtaatgttgcaag
aacaaactttcccctcactgcctccctagggtaaaatggctgccaagatattttggaaca
gaaacttaagagtatcttggccactgtgagacagtaacaagggtcctttgatattttcta
tgttctctgtggtcaagctgtcatctgttttcttctgaggttctgagatgtcataggcca
atactggcttgtgacctgtttctttgaaggatatgctgtaggagttggctcctatttgcg
ttggaaggcttgaaggagcagctcttttcagaggagttctcatggagaccactagggagg
aagaggagaccaaacacaatgggaaatgtttaacaattaaaaccagctcttgcctgtgtg
gtcctgcgttttacatcacttcgtggaaatggacagctgggaaaaagcctgatagatgat
agagccagtgtcctgttaagcatagtctataacgtagacaagaaaagggcaacatattca
gactgtcaaggaagttatctaacagctacgatgaccacaggccaccagactgctggtcca
tagctttacagttacctgactgagaaaatagaagaaaggttggctgagcccaacccagaa
acgttccaaaaatgtactatggtttttcagcgtgctaacactttttattcattttcaagt
gaagttttcattatctgaaaatatgaaactttaaaacacaaagcccacatttcatcattc
aatttatgagtataagatataaaaatagtgttgttttatatttacctacttctttttaaa
atataaaatgtaggtgctggagagatggcttgatggttaggagtgtggactgctcttgca
gaagaccagagttttattcccagaactcatgttgggcagctcataactgctgtaattcca
actccagggcatctaaaagcacctacaaacactcacctacaattaaaaaccataacaaaa
caataaatgaatgtataaaatgttaataagcaggaaaatttccaccactcagaatcaatc
cctgactatagtgtgtattcttttttcatttatatttcccatatgtgtgtatgtatgtat
gtatgtatgtatgtatgtatgtatgtatgtatgttgttgtatttctctgtctctgttttt
ccttcttttgggatagtctcactgtgtatcccttggctagcctgaaactcactaagtaga
ccaggctggtcttgaattcgtagagatacacctgcttctgcctcctaaatgctggatcaa
agatgtgccaccatgcctggaaccttttatatttaaactaaagccatatttttttctaga
tttatattttatcatgtatgtaacttttcccttcctcccttcttacctccctccatccct
ctctttcctcttcctccttcttctccttccttttattggatgacttctgtctccacgtct
caagtgctaacatgacaggtatttgctacccacctgatcgataactgccaagtgagttgt
aatatctacttttgtgagttgtgcctatacttacgcactcctgtgttattactgttattc
cacagcttgttgaatttttttgtatcttataaagaatgagaaaatgacataatgatgcaa
tatgtcttgaggttttttttgaactaattatccagacctgtttctctggaaagttctcca
ggtgacaaatttagtggatttgtgagagaactcctgtgtgagttggaaagatagagttag
gagaagtatttgaaatggtgcagccagcctttagttgacacttgaggcacccaagtgctt
cttggtgttaggcacacaggtacctacaagatcagtcctgatcaggtctgaagaaaagag
tcttagggtgtaacaaaatagtaagtacagtggggatatagctcaaggctagccaagctt
acttggcatgtgtgaggcccagagtttgctacccattgctcccaagagggctaggggaag
aaatgtgtattagtttcactatgagtcctaggcaaactgactcaagagagttctgagaaa
gacctatattcatttaactgcaactcccatcccacccagtgatccaccaccatgcctagt
agcacccacttaactgcatagtctcaggcatatctgttgtcccatatgtgactccaaagc
tcagtttgctcatgtggaacccaggagaccttttgcaatattgtgatgtctataggagaa
aatgtaaaagaacaaagagagtgagtgcccaattcataatggactttcaaatggaagtca
gagccactaccaccaccaccatcattatcactgctgtggctatatctgtattgataatct
gtctctcatggcttttactctacttccctctgtcctctaaatactctcagctattgggtg
gtgtcctgtttcaaacacaattttttttcaatagaatcaaatagtttacttcctgacttc
atgacatgatccaccaaacttaccagtccatcaaaaatgacctctctttagtctgtcttc
ctgtccccttttccttcctggaaagtttataagtgatgagacatactgcaggtttcattt
tttcagtcctggtcctcttgctgtatttgtttgtgcttttctcgccatgctatgatgacc
tgctcatcatagcgtgcctgggaagcaaccatctgtctggacactattgctcatttctaa
caatagcaaagacaactgttgactgaacacctcatttgtgccagatacacaagcctcact
ggggaatgctatttccttctctgcagcatcacagtatggctcacaggtattaagcaacat
gcaaaaccagggatgaagctgaatcttcaagccttgcaccacagtgtacagatggaggaa
tggacttttttccttttcttttttttattagatattttctttatttatatttcaaatgtt
atctccaaggtcccttataccctccccctgccctgctacgcaacctacccactcctgctt
cctggacctggcattcccctgtaccggggcatatgatcttcacaagaccaagggcctctg
ctcccattgatggtcgactaggtcatcttttggtacatatgcaactagagacacagttct
ggggggtactggttagttcatattgttgttcctcctatagggttgcagacccctttagct
ccttgggtactttcttcattaggtactttgggtactttctcatttattaggggccctgtg
ttccatccaatagaagactgtgagcatccacttctgtatttggcaggcattggtgtagtc
tcacaagagagagctatatcagggtcctgtcagcaaaatctttctggcatatgcagtagt
gtctggtttgcaaagatctcccatgctcatggattggcagtatcaatatagtaaaaatgg
gtatattgctgaaagcaatctacagattgaatgcaatccccatcaaaattctaactcaat
tcttcactgagttagaaagggcaatttgcaaattcatctgaaataacaagaaaccttgga
tagcaaaaactattctcaaggataaaagaacttctagggaaatcactaagcctgacctca
agctgtactacagagcaattgtgataaaaacttcatggtactggtacagcaacaaacagg
tagatcaatggaatagaattgaagacccagaaatgaatccacacacctatggtcacttga
tatttgacaaaggaactaaaaccatccagtggaaaaaggacagcattttcaacaaatggt
gctggctcaactggcggttatcatgtagaagaatgcgaattgatccattcttatctccgt
gtacaaatctcaagtctaagtggatcaaagaactccacataaaaccagagacactgaaac
ttatagaggagaaagtggggaaaagccttgaagatatgtgcatagaggaatggattttta
atttttatttctgcctgatatcatctttaggtataaaaatctcataactccaggaaggag
tgcattatatattaaactgctggtaaattgggctaagtataaaacatagagctaccactt
acctgcttctctagggcaaagggcaagtggctaaattggcatttgaataaatcctatcag
gacagagggtgagccatattaaaaataagtaatccccactgtcaataagacaaaaaggca
accaacagattggaggaagacttttaccaatcctacatctgattcagggctaatatctaa
tatataaaaagaactcaagaagttagactccagagaaccaagtaaccctatcaaagaatg
ggtatagagctaaaccaagaattctcagctgaggaatactgaatgactgagaaacatcta
aagaaatgtttaacatcctcactcatcagggaaatgcaaatcaaaacaacctgagattcc
agctcacaccaatcagaatggctaagatcaaaaactcaggtgacagcagatgctggcaaa
gatacggagaaagaggaacactactgcattgctggtgggattccaagctggtgtaactac
tctggaaatcagtttggtggttcctcagaaaattggacatagtacttgtcttagtcaggg
tttctattcctgcacaaacatcatgaccaagaagcaatttggggaggaaagtgtttactc
agcttacatttccacgttgctcttcatcaccaaaggaattcaggactggaactcaagcag
gtcaggaagcaggagctgatgcagaggccatggagggatgttccttactggcttgctttc
actggcttgctcagcctgctctcttatagaaccaagactaccagcccagagatggtacca
cgtacaaggggaccgcccctcttgatcactaattgaggaaatgccttgcagctggatctt
gtggaggtatttcccatacctaagctcctttctctgtgataactccagcctgtgtcaagt
tgacacaaaactagctggtacagtactacctgaggacccagcaatacccctcctgggcat
atacctagaagatgttccaacatgtaataaggacacatgctccactatgttcatagcagc
cttatttataatagtcagaagctggaaagaacccagatgtccctcaacagaggaatggat
atagaaaatgtggttcatttacaaaatggagtattactcagctattaaaaacaataaatt
cagtaaattcttaggcaaatggatggaactagaaaatatcatcctgagtgaggtaaccca
atcacaaaagaacacacatagtgtgcattcactgataagtggatattagtccagaagctc
agaatacccaagatacaatttgcaaaacacaagaatctcaagaagaccacgatgtggata
cttcagtccttcttagaagggggaacaaagttcccatggaaggagttacagagggaaagt
atggagagagactgaaggaatgaccatccagaggctgccccaccaggggatccatcccat
atacagtcaccaaacccagactctattgtggatgccaataagtgcttgctgagagaagcc
tgatatagctttctcctgagaggctgtaccagtccttgacaaatacagagatggatgctt
tcagccaaccattggactgagcacagggttcccagtggaggagctagagaaaggacccaa
ggagctgaaggggtttatagcccataggaggaacaatcatatgaactaaccagtaccccc
agagctcccagggaataaaccaccaaccaaaaattacacatggtgggactcatggctcca
actgcaatgtagcagaggatggctttgtcagtcatcagtgggaggagagggccttcgttc
tgtgaaggctcaatgccccagtgctggggaatgccagctccaggaagtgggagtgggtga
gttggtgagcaggtggaagtgggaggggatagagggagggggtttttcagaggggaaacc
aggaacgggttaaacatttgaaatttaaataaagaaaatatctaatagacaaaaaagaaa
aaggaaaaaaagtaatcctatttggctaaggtacacacacacacacacacacactacaca
tatatacatatatatgtatgtgtatgtatatatttgtgtgtatatatatatatttttttt
attttatttattcattatttttatttttattttgtcttgacagatcttggatgtgagtca
tggaaatgaacctgaactgagagttgctttccaaagactatctcaccactgggattcagg
ctgaacaaaggagttagattcagtgagttctaactgtgggtgatgctcaccataatggag
aaagcaaacaaagtcatgtggttctataatgctgtttgtaaggtttgggttcagattagt
gcatctgtaaagtccttaaagaaagattaatggcagaggaaaagagaactggaggacaga
ctaaacagatgctatttACATGGGCTGGTAAGTCTGG
Primer
(+)CAGCACTTTTGATGGGGTTT
(+)CCAGACTTACCAGCCCATGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.