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Mouse element [ mm371 ]


Position: chr4:89,054,899-89,060,474 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cdkn2b - Dmrta1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGTCCCCTCCCATTTTCACagtaagcctcatgtatttgatatgcacctcctcaaagaac
aatagtcgcaccccccacccccacccccaccgccctgtgccctgcactgtgcagggagga
gagaacacagagatttctaagaatatactggtgtaattttctgttaactggaagtgagtg
gcagttcttggaaagctgactctagaataacctgtttctaacatcactggctttatttga
tgtaaaaaaaaaaaaaaaaaaaaaaaacagcaaaaaactgttagttcatttaactaccag
aaagtttctatttaccacattaaatgcctaaacaccaatggatatattagctaaaagtct
acatatgctctaaatcattttgaaagcccgtgtttatatagctgttctgtctgagaccac
acaggtgagaatgtcgagtacaataaataggtctatagtcattgtgcacaactgtgtttt
cttttctctctttttttttttaatatttggactcttaaaattttaaggtcatccttacaa
aggaagatgttttatttcattttgtgtgccctgtcaacgagcacctatatcacacaggta
aatgtcagttccaactaagaaaatgaatttaaaagaccaacaaccaagctggatttgtct
tacgtgaggaaaaaaaaaattcaaaatcattcttaatgtgcgacccgaggagggatgggt
atgcaccgcaggaccacacgcttgctctgggattgtagcacactacatgcaagcttctgg
tttcatgtctgtttcctttggctctcaggttactgtcctacctctcctttgctctcctcc
ccactccctccctctcctcttcctccttttccccttcctcctcttccacctttctctttt
cagggtctccctgtatagcccaggctaacttccatcctactgtctcagattcttggtcct
gggatgtctggtgtacacctcctgctaaaaatctttgtccttgctaatgatgtaggtctg
ctcttattacagaagccactgtggggaggtggaagctggcagaacactggggattttttt
tttttttttttgatgattctgcttttcttgaaatatactggataggacaatggtagagag
gatgattttgagcctaagcagttagtcttcaggaaggttttctgcaaggaggaattccca
gcagcctttgggaggatgcacaggagccggtcacaacggacatgctccaaggttgtttct
tcaaaccagatccccgagctgtgaactttgggttgtccattcggtagggagaggatgaga
agaattagctgtgatgttgtacgagaaacggagttgccagtccacgtagcttctggaaag
caggcaggaagccaggctaaggggtctctctaggaccagcagtttccatggacaattagc
agtagaggggaaactgctgaggctcctttactcggatgggagcttctttttgcagaatgc
attccaaaacactgctgtagtatgtatggttggggagtgttgtagcgtatataaatgtag
agcggggaatttgcatgtttgtgtgagcagggctctatcaccttttacggcacccagaaa
atgggcaaggtagggagaaatggcaatcttgctgttttctggtttgtctttccttcttaa
gcccggcatgtctggtagaaaagccaagcacttgttcctctgttgaaacacaaacaatga
aataaaataacagattctttcagaatagcacatagcagggctgtctaaaggaaagacaac
ataagtcacctacataattaaaaattatagacatgatacaaaattaaaaagaaacagata
agctcatttaattaaaaatgttattgtgggcacgaagagatagcttggttggttcattct
tgtcttgtaagaggtgggacctgaattggtcccagtacccaccaaaaataggcaggtatg
gtggtgcacacgtgtcgttctggcactgtggagggagtggcagggggatcctcagcttca
ctggccaggcagtcaatacactggcaggctacataatgagctccagaccaagagaaacct
tgtctcaaagaaggcagatgatgtttctgaagacgagacccaaggttgcttcctggcttc
ctggcttctgtatacacagaaacacgcatgtccataaaaagttattgtacatattgaaga
tataaccatgatattataagattcatggatctagtaaaatggttaacagagtgaagcaaa
ttcacacctcacatagccacccaccttttgtccctggagtggcaattagttcatttaaca
gacatcttgagtatgactggagccctcccagtgtatgttagagtttagagcttttagatg
tgctgatgtgtttcttttgacccctatcgctccacttccttctcttattcttcctgtaac
catgtttttctatccactgaaatatttctacctttgtagacagaagtagaaataatatct
ttagattccacattaaatggaatcatgtcatactacctttttttgttggattgatttaat
ttagcatacttttaatatatttcacatatatcaacttgtttaaaataacaatttaacata
tagtaaataaaaatattgaaatactgtgcattctttttacataagtatttaatatgtaga
ctatatcatccacttacagccagaacatcacattgctattagaaataatttttagatttt
tttttataactttcacacctgaaaaaagggttcatgtacttaaaatgtattcaacaaaca
taaagtttttcaatagctgaccttatgtcagcttaatataaattattatattaatggaaa
taaaatttcgacttctcacttctcttagccgtgattccagaaaggggcctttgttgaatc
tgtatttggctacaccaatagaagaaagccagtcaacatcatgttgtgatcgtccctggc
tcttttcttccgagctgtttatgaagcagggatctcacaggaagctgggctgtaaagttc
tgggcagaggtacagagcactttaacctgttacgtaccccaccactaattagccctctga
tgctttgtttctaagaagaatgagacttgtttctctgccctgttgggtcttgcagaagat
gctttgaagatccaactgaacctctaaataatggatttctagaccttatgggtcccagac
atcttgttcaatgagacttaaatacttgcctacaaattagtattctcgtccctctttatg
gaccatgttcttatttgtacctggttttaaaattttcattgtggtatcgtagactgtgtc
tgagatccagtacttgactgacccaatgtttctcttggtgttacgtgactttcttgcctt
caggatttgtgaaaccagtgtttggcggctgctagtcatttgactcatgaaacttaccac
taactgaaatctgcatttttgcctcttcctgttcatgtttgagtcgttttataatgcttc
ctgaaatacttcacttaaaaaagaagtcaaacaacaagaacaataacaacaacaacaaca
aagctcttcccaacttgacaccatttgaagcagttaggtcctttcctgatggggcagttt
gtgctgcatacattcagggcaggagagataaagggcgtgtggaatctggaggtgtgtctc
aaaatccaacaagcagtagaccttgttagtcaggtcaggagaaagtcggaggctttccct
tttaataaattattgtagattatatatgaatttaaaatattttatcattgtattttttac
atgtatgggtgttttgcctttgcgtatatgtatatatagcatgtgtgactggtgccagga
aaggacactggattccctggaactggagttagcacacagctctgaaggtactctggaaga
gcagccagtgcttttgactgttaaagtcatctcatatctccagcccttgtagattatgtg
tattccacatacttctttttttttttccgtttaatgatttcccctgcacatttttttccc
catgtgggatgagtgtgcattttccttctctgtaaatctgttctaaaatcctttcaaatc
ttagctgaggctttcttaggcagtgttttgtttgttttctgagatagggtttctctgtgt
agctctcagagatctgcctacctctgcttccaagtactggtattaaaggcatgtaccgcc
attgctccccaattcttactcagtgttttagggttccaatttccttcaggaaaggagatg
tgtataatcttggggtttccccatggtctggtaaaatgaaaagtgttaatgattggttta
gatttttcctacgattgttcggatcccacgagagagctagggaagaccacagtgtagcca
gccttcttggggagacagcaacacaaatgccagagaaattttccagttggctttctatca
gactttttttttgtagttttttttttaaagcactgattcattctctttgctaaaattcaa
agaagtcagtgaataatgcaaatattagagatcatttaatttcagaagcttaatttctga
aaaaagaggagagctaagagggtgggatttccctgttttaaacaaggaaaggatttgtgg
tgcttttagaaggcttggctctcttccatataattccatacatgctcagctattaaccca
aagtgaggtcaaagtgcatttgtttttatagaactgaaattgcctgcagatgcttttatt
ctttgtttctttcccttgctcaggtcagcattcctctgagacagcctgacccttcttcac
tgacacagcaacagtctgtccatccatccatccatccatccatccatccatccatccatc
catctatccatccatctagcctgcttcttaatcttatgttcacatacccttatattgcat
tcattagactttttttttgaaaactgtcaaaatgtctttctagggatcctgacacccctc
actcagcacttttgatggggtttcagtacagtcatctaggacagcattgctttacagaaa
tggatttgattgaaaccgcctacagcaggtgaaatagccaggtgcccacattacagctct
gaaaatatccctttgtggtaccttgtggttttagtttctgagaaatgatgatgaggagct
acaacagaaggcaagaaatatcaggaatgtctgtttgcctgggtgtattcagtcagaggt
agagtcctgtttgtgtgtgtaagactggggttttcccccctcgcctggtggtaatgttgc
aagaacaaactttcccctcactgcctccctagggtaaaatggctgccaagatattttgga
acagaaacttaagagtatcttggccactgtgagacagtaacaagggtcctttgatatttt
ctatgttctctgtggtcaagctgtcatctgttttcttctgaggttctgagatgtcatagg
ccaatactggcttgtgacctgtttctttgaaggataTGCTGTAGGAGTTGGCTCCT
Primer
(+)AAGTCCCCTCCCATTTTCAC
(+)AGGAGCCAACTCCTACAGCA


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