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Mouse element [ mm342 ]


Position: chr9:106,285,326-106,287,994 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Dusp7 - Rpl29

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gcgCACATGGGTGGCTTTCTCTTtccagaatatagaaccacttactgtccctttcaacta
gctacctcttacctaggtttcctctgagcccacctccaatacttccacctctacgaagcc
cttccctaagcatattctccaagttgggggtctgatgtctcttctggtttccatgggccc
ctatgcagaatcaaccctgggccaggctcagctggccatcccctaggccaccttgggaac
aggatgagttagttctgtatccgtctgtctgtgtgaactacactcgtgaggtattgccta
ggtccctagagggttgtcccctttcacacggtgctgctccctgtctcccccccaccctga
ttgctcccctgcccttggctaggctccagccagagaaggttctggtcactcttgttcaaa
aagatctgccattgcctcagctaagtggaggggtctggaagccacgctaattgattaatt
aaaccctctcggttaattagctacattcctccagggaaagaagtctagagctgagccaaa
gcctagttgggactgggggaggggttcattagctagggtcaggcccagcctgaagcttca
ggcttgatggttggggaggcagaggagaggggagggctggagaggtgtgtagagtagttc
tgggctctggagccagctggtccacctaggggggtaggagagtgggggggtgggggggga
gaagaggcctttagctttgtcctggaccctgagctcaatcctgagcatacacactgtgag
ctagagactaggggttagttagccccgaggaagagagaagcagaaaatccaggagcagag
ggctgcatctggcaggataaagcccacacagggctggggggatccaggcaatcctgtccc
tgctgctgcttctacaccttcgggggaggctttgaatgcctgcacctgaacataaatctg
ggctgggggggggggggggcaggctgcagcaggtttgcagcagaggcagcacctgatcag
gtttaggttttaaagagtccaggggcggggcttggagaaacaggagaagggtgggacctg
gcgcagaggggcttcaggcacccatgcagcaaggacacccatccggtctgagaatagcat
cagataaactcccactgcgttgcctagggacacccaagttcttcctctggttctctttcc
tcatcggcaaggagccatgggggtggtgggtggggaggaggtgcccctgaggccacagcc
ttgggatatgaatgtcacccagtatgtttccttgacccaggacaaagcaccttcttcacc
tctgcgctcgctctcgtggcgctgagatgcaccagctagggaagtgacatgcccagcccc
caaggataagcattcaggaaatgcagaattctggttccagggtcgcagagggacacctgt
gtctagcctggctcaagaggaagagggattggccatgggtcagaggcagaaagcccagga
catcccgagcagccacaggcagcaggcaagggctacagccttggcaagaagcctgccctg
ggctggtcctccagctccctgagtggctgcccaagtgggaacaatgaccctttcacgtca
cgcctcctccagtcacagcaactttggcgccgcaggacaaaggggccatttcatcattgt
tggattggatcaacagcctgcgcgacagagctctgctgccccccacccagccaggcccag
gactctgtctggtccaacctcatgggtcccagagaccctcttgatccttgtcttcctttt
tctgacttactgtgagaatgctagcccagcttcccagcctcagtcttcccgtgtggaaag
agggtacggcagtgcactaccaggctccattcaagttgaccatacttgaagatgtaccat
cttctacctgtgtcttctgtccccagtctgccctggtcaccaaggtggagcacagccttt
ggaaggggacctgtcccaaaggtacagaaaggagacacttgtctgagtccttgccccagc
ctggccttccagggctactggccttccatcatgtgagctagtccggggctggccagagtt
actcatttcagagttagcctcagcccaccatgggatacctgactgcacagagacccaaga
ggttggcttgagctgggcttggctaagaggaaaaatataggaggccttaccttgctttca
gtgaagagacacacgcctcctgcgatcaatattggaatcctgccatctagagcccagcgt
ccccacaaagaagcaggcactgtgggacacagggcaggttgtggtcccatgcacctttgg
gcctgaagaccacaatagtattagaaagtaccatggtttcagagacccagaaggtcaagg
ccatgggtctggggatcccagctgttcacgagcaccgagtgtaagccactcagacagcct
gtcccaacaggagcattctgccattctgctcagcgtgggcacagactcaggaccctgaga
gtgggacacactttcagtgtggcctccctgtattggggatgggtgaactagggacttatg
tgtttcgccaacatgccgacttcacaggtaaagctccgaggcttcggcctgaggctctga
ggcagtgcgGTCTGAACCCCACACGAACA
Primer
(+)CACCACATGGGTGGCTTTCTCTT
(+)TGTTCGTGTGGGGTTCAGAC


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