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Mouse element [ mm33 ]


Position: chr18:83,057,021-83,060,252 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 2210420H20Rik - Zfp516

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
atagTCGATCTTTGGCTCCTGTTCtgagttcatcgatgaaaacgtcacagcggtactctt
tagggaagcaggattcaatgtaatccatttgtcccatttgttaactcctgtagtaattgg
ttagaggagggagaagtttgaagttattggctaagtagagatttctggactctctgtgaa
gttcaattatctatgtttcacctggcctcaattagtactaataataggtaactatgtaaa
agttgatttccattgtatttgtttaatgataggcttattaattgtcttcactaatagagt
ccccaggcaggaagccccctccttcctttgcaagccctccactctaattggtcggctcag
tgctgtaagagctcaggatagtgggcagttcttagcatgaaacaactcttttttcttttt
ctttttctttttctttttctccctccccacaatgttttcaagacagggtttctctgtgta
gccttgactgtcctggaattctctctgtagaccaagctggcctccaactcacagagattt
ccctgcctctacctcccaagtgctgggattaaaagcgagcaccaccaccaccaccactac
caccaccaccacgcccggctgaaacaaatgttcttaataatgaaatgtgtatagccaaga
agcaaaccaagaaatttccagtatgcatttggtaagctctgcatgcacagccaggaggca
tgacagaatggctcagacttgcagtcggaagtcggcagcggcgcttcccagtgagctgtg
ttctctgtgcaggccgaggcttcggcttgctccatttagactaagtcagctttttaaaag
tgcttgttaattttagccatgcgccttgtttcagttgtgttatttctgtttactaaccac
agtccacatgccttttaaggtttccacctctttccttgggcacatgcgtatttatattaa
acacaataaatatctcccattgcaagagcaccctatgaccccctttgatctgaagtcccc
cacatctcttcgcttgacatataaattagccagcccctccctcctgagaggccagaggag
ggtagggtttcatcctccctggcccctcttgagtctccagcatcctgttttcccattgcc
atggggatgcagctatgcacacactgcagcaaacgcctggaatggggaaaagtccaggcc
gagatagaattactaaccaaacaaatgctgttggtaacagggtgcttggagccgggggca
gggggatccaagacaccccctcttccccccacaatcaaattacatgtaaaaagtgcagac
agcaagacagaaggcaagcgtggcggttcttttaaagataatgcacgtatttgacaccca
ggaatacagagccagcatgtaaactctccttagtggaaatgttcaggggcttctgtgaaa
atatccctgtcctgaaccctactgagtagttttattgttataaaaggaagcactggagcc
aaaccagaggccaactagccaagacactcggcggcggaaagctggagctgcccccaggtg
tgagccgagtaacatcagcctgtttgctaacgttgtcagaggcactggcctgttcagtgc
tttgagaactggtagaatgattaataacacacagggcttggctacggtgtcccagctaag
acagctgcccgtccttgcatccgaatccctcggtctgagctgggctttgctgttacctcc
tttctgttttctgcttctaacagtgtgctgcttggttttggttagagagccttgaccagt
ctctaagggagattagcaaaaatatttgataaagaaataagtggttttcattttaaaatg
acagtgagtttttttttaatagggaaactaaaaatatttcctgtgtataattatatggcc
acagagtattaataactttatcattgtggtaaatgccaatgctcacagactgatgtttga
actctggcatcaattagaaaatggtgtttatccttctcaagcccaacgcttgttgcacat
caaagttttcttacaaaatgtcacatgacgtgatcctgtcacgtgagtggattgttgtgt
tcatactaacttttcagtggatttagaggctctcttgtggaacagcctgatgttcatagg
aacacagccctagcaagcctggctgcttcacaccagacctcctgggactctgaaaaatat
cagtgttggtttccacagtagctattttttatatatttatgcggaattacaaccagcaat
gactgcagcaggcagctgtctctgaccatggaagatcattctctacctccactgtccatg
tccacaggagtttaaagcaaccaagcagcttagtttccctcagaagttgtttcctggcag
cagaaagcacagggaaagggctgctcagtcagtggagccaagcagccacaaagccctggg
ttcaatcccagcaccgtacatgctgggtgtgttgatacatgcctgtaattctagcactca
gcagctggaggaggcaggaggattagaagtccaagatcatcatcctttgctgcaggagag
tttaaggcgagcctaggatataagaaaccctgtctcagagagagagagagagagagagag
agagagagagcaaggaaggcaatctcaacactcctttcctctcctaagttggttacaatt
aacccagcttctcaacacagacctttgcctttttggtagaggattttgcaggtctgtcta
gaccgatcttcagctaggtagctgtctgaactattgccagtgttggttattgtcttagag
aaatggccttttaaaaatacaaggtttccgtggactggagagatgtcccagtgagctaag
atctcctatggtaagataatgggaggcggagaagggagaatacacagattcaggggccac
ctcgcctgacccattcgcatacgcagcaaagaacaacaaagagaccctatcctcatagag
cagggtggaaggtgaggaccacacccaagactgtcctcggtcttctatatgtccccatag
catcttagatggaaacaggcacataccatgtacacatatgtatcacatacacatcagaga
tattatacacacacatacacacaaaatctgggggatgggaagtggtactgaattggtgaa
cctaggggttccagcaccaaacaaaggactgcCCAAGGCAGAACTCCCTGTA
Primer
(+)CACCTCGATCTTTGGCTCCTGTTC
(+)TACAGGGAGTTCTGCCTTGG


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