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Human element [ hs317 ]


Position: chr9:128,671,865-128,673,002 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PBX3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGCAGTGTAGCAGGGAGAAGaagtgatccataagtgttctctatgttgccatttgcattg
ctaggaacgtgaagaaacgtcagagtcatagcctagggaattacactgtcatagaaaaac
actggtgattcaagaaatgcctttaaatggttttcctcttctcatttaaagtacatctgt
gggactgcaagaaaataactcggtcctgcccaggagtctagtacctgtacagaccaagat
actaataatgtcattatagcatctagctgctttccatcgaacccctaataaaggtcatta
gctgcctgccttcttgagtgagaaggttttgcagcaagtgcttggagaaaagttatcagt
gctgtatgttagaaataggcattctgccaacagctttataatgaaggtgaaatgtaataa
agcgatggattgacagtttatgtgttgaaagtgaaggaaatggaggtgtggagaagcatt
atggggaatctttctagtcatatcttcaatttaaccatcaggggaaatgcttcaaaatct
tagatttatgaatttctagtaagcagtttcacagcatgtaaacaaatctcagtgggctgt
tttaggaaggtagatttgggcagtgaagtaatcatttttattcctctgattttccaaata
gaaatggacatatatgataaaaatgtcagccaccctctccacgtcagggccctaacagga
ttacatgtcagttcttaatgtctcgctctgtttttctttgccatgaatggctgcattatt
gctcacaggaacttcactgtaatatatggtaagagacaagtagctctttatggccagtga
ttattcggtttgaatgaaacctgtgatttatgtccatttaactgaaaagccttgtaaatt
cccagtgctgcatttttcctcaatagagaatgagtcaagcgaaagtgacaactaggttgg
cgtggaaatgtgcagtgcattgccgtgttatatttaatatacctgacatgaaaaacgtgc
acacaccacacagtcaccttaaataggagtgaaagtgacattagcttgtaatatgactgc
catattcagtggattagacactaacattggcttaaaagGAGATTTGGAGCTGGAGTGG
Primer
(+)GGCAGTGTAGCAGGGAGAAG
(+)CCACTCCAGCTCCAAATCTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.