Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2749 ]


Position: chr1:170,773,786-170,778,693 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PRRX1 - MROH9

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTGGAACCCTTTGGCAGTTAgctgatatctgctgcagataatagcatactgacaaaaagt
cccttaaatcctaaagcatatgttttttaacatggcagggaatctggaaggatggctgtt
cagcagcacagtgatatcctcaagaactatggatttccacctttctactctgccctatgt
gttgctaatgtttcatgttcaagagcatagtgctagcggtttcgggcatcctaggaagcc
atgactacgtttatttaagaggagggagaatgttctttataaatctcttttttaatttgt
gagaaaatctttcctccagtgcccccagtaggattctctgcatgtgctattggctagtaa
taagccacacatctaggcctaaatccaatcacgattcactctctgagattgttcaagacg
tcgatttcccttagccagcaaaaaaagaaggtacactgggagagggctggtgatgctgtt
ggtatggcaaaaagaaaaaaaaaattgtctgccacaagcactacaacaaacttcttgttc
tagggattaatttagttttaatatggctgatggaaatggaggttgggagaagagaggagt
acagacaagaggggagaagagaaagggaaaatgtattgagcacttccatgaattaatgtt
agctccttttacatacttcacaatatgctcttcacatggtacttttattatacccatttt
ctagaagctcttttaagtctttcaaatcacacttgaaaatggcagtgacgatttgaattc
aaattgatgattagaaggtacatgctctctagagatactggtttgttttatacttgcatc
taaggtggataacttctccccttaggggagaatggctggaagttatccaccttagatgca
agtataaaacagaccaatatcgaagaataactcccatcttttggaaaacttgtctaatgc
ctctttgcacctttaaccttcttaacaccccgaattaagctaagtcattcatccattagt
tgtatgcacagcctgttgtgcagtcgtctatgtttttacttcttggtattctctgagtaa
gaggaaacgtctgtgaccttccactggatccttgcttccatatatcagaggctaaggcaa
tcacagacagcactggtgggaaaccagaacagaaaacacacacacacacatgcacacaca
cacacacacacacacacacacacacacacgaatggaacgaggaactccaagagggacttc
taatatttcattgttattgaaaattacacttcataaaaagtcttgttcatttaaagtttg
aagagtgacagaaaaatagctttcatactcaagtctgctaaatgtatgataaatcaaaaa
agatggaacaaggagaaacttcaagaaaaacaaaacagaaaatcagtgtgtagtataaat
aacacttcattagtgctgtaatgccttacaaaacagtctaaaaaattccacagggtaatc
gtagtgtacagcgcagaagagaataatttactatcgttaggcgtttgtaatccctacaat
ggaaaggagaatgtatgcatgtaaccctttaatgatagtggacttgcaggcataaatccc
taaatgatgagatgtgaatacattttataaattcaagtttctgttggggaagaaaagtca
ggctgtctggtttgactggcatgctgacctaagtcaattactgaaccacggagagctgta
gccttgggagtgtgctatgttctttctacggtcttaagagaggccaggctcaggggttga
gcctagcgggctggtctctcgctcatcaggcacacatcaacactataaacacacagtttt
tagctagtggcagtcaatgccaaaggcctggcagcatgccacaccatctcaaggcactct
cagcaataactcaaatgtttttctgtcagaaaaactttttctgtactgttttcaacactt
cagcttagtgtgggaccgaagcagaacgagggataggaaaaattaataattttacactcc
agctttcaaagccccctttcctttggtagcagagtttcttcttttcattctatttaattc
tcaaactctcctcaacaaaatcttctctgaagcaaagacctaaaacttattaacacggga
atccaaatgaaagacaataggttaattgttacttctcccacaggtgttttaaaaaatgtt
aatgtggattcaatccttaaactaagcaaaatttagaaaaagttttcaaaggagtgttct
ctggacaaggatgcctggatgttggatgggaagtagggagttcccagaggctagattgga
tattatggaaggattactagagtttaaccacggaactgtaagaattatgatcaggcagag
aacaaagcagtagatcaaatctaaaagggagacaacataaatatgaagaaataagatttc
aggttagacgccaggaagaaggggcccaggttggaaagcagaagcatgagacgagagttc
caggaccagtgattcaggggaggctgtgaacaatacagagagggccagaaacctgttgtt
acatcatgttggttacatgggacaagctaggttaaaacaggagttcttcagctggtggga
ggggtggtctgagagagagaacagtgatccaaggacagccttcaagaggtctggaaaaac
cctgaactctcctttaaaatgtgcaagaagaaaacttgaagctttgattaaattctcaaa
gcaatatgtcaccctagaatgattaaatatagcagcccaatgaaaagcacctttgtggac
cctgtggatcccgtggcagtggcggtcatctactgtcagtcatgtagttcagcctggttc
ccacactctgattccatcttctttaagcacttgcagcaggattggtaatcattcgcattc
ctttcttccagttagtacccctaaaggaggaaaaaatggttttgcttaacatggactatt
atgaaatggcatctctctctctggtgactcacaggaatgaggcgcccttctctggaaggg
taggttgcccacaataatattgtctttgttcttctagatgaacagctagtccatctcagt
ctcttgccttatagatctctcaggtatgagccaaatgccagtccactagatatcctgggc
tccaagggccacatatcaaactctccaaaatgcctctgtccctaggatgatggttgaaag
ggggatgggaatgaaatgcacaggatattaatagctctttacaaaaatattttaaaattt
tatatttcccaggcatattaacttcaaatattttgtgctctcaagtggatgccaagccaa
agcctcaaagcctgtaattagctaccttctttgcaaaccctgcattaatcatcttatttt
gagatgtggggaaagttggagtgtatttttggggggccatgaataaaacaaagatagaaa
tagtttgatttcagcaacttcttactcatgagtatgttaagggataggaggagtatccca
tggctattaacagtttctactggggacaagcaccaacctatcaaagcacaaaatataata
ttttgaggaaattggtcctggaagaaccatggcaccatctggttcttggaaaaataggca
cgcgtttactttacacttgaaaaggaagcttttctgctctgaattgtactgtttcaagtt
gataaacctgtttctgaagggcacatgttgctttctttattggatgcttatagtgacaca
ttcctgtttgtgggggagctgcacagggtaggcaggggaggtgaagactcagaggagaga
cagggaggaggggttcccaaatgtcttgatatgaaaaataggaaacagttcctttttgaa
aacctgtaagttaaccagcagtagcaacaacgatgaactgtcatgcagaagactggctga
ggtttgggttataaaacaatatttgccatcaagagggttttagtattccagtttgcagca
ggagtggcttgtggccaggctcagccttgctagagaagctcagagggttttcttataagt
cccaaactatttaaaaaacagactcaaacacagtgatatctcacttatccagccccttgc
aaaacagatgttccacagaaacacatttctagatgatatttaggtttatgttataattta
ataaagcttgcaaaataattttgttcatttgtttttcttatttcagtctgatccttataa
caacccacggaatacagcatgggaggctttattaatctcactgacttgcccacacaacag
aggtagcataattggtttttgccttgctccccatggctctcagacttctgaccctaggta
tatctcagaaactttttcaatatattaaagacaggataatttgtgaaatcctactagtat
tcactcctaggaaaaagaagactgaaaccagaattgcgttgaatataataagggttttaa
gtatctttttaatattttaaatatttaaaatacctttaaatagtgccaagtactattagg
tactgtcaaagaacaaaggaagatcctggacttaaggaatctctgggatgaggtcaatgt
ggtggctgggatggtgctgggccagggggcagggagtctgggaggcaggccatttctaga
agggccacgcaggaaggaaagacaaaaagcgggggctggatgtggggcagacatcagcct
gagagggtgggcagagtataatggggtccttagcaagacaacgcctgagctgggcaaggc
aaggtgagattatgtggagagccacccactaccaccatgttagcagtttcttcatgtatg
ggatcatcctgtccagcccagtctcaaaGAGACCATTCCCAGTGCTTC
Primer
(+)GTGGAACCCTTTGGCAGTTA
(+)GAAGCACTGGGAATGGTCTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.