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Human element [ hs2738 ]


Position: chr1:170,586,934-170,590,875 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: GORAB - PRRX1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGTGCTGTCATCGCAAGTTtaaatttaacactggtgatatcataaccatggaatataat
tttttaaaaatatcacagctgaatttttagattacttagtatcattaagaagtgagctcc
accaggcttgatagagactactgacatttaagagcatacaatgaaggaaatttatttaaa
aatcagctgtgtcacatactgtgttaagactttcatacctatgatctcacttagcctcac
aacaaccccgtgagctaagtagcattattcttattctgtacactagcaacttaagatttg
aagaggttaaataccttctccaggatcacacagatggtaaatgactgaacaaggagactc
acccaagtcttcctgattccaaagcatgtgctctttccattacacacggaatgttgggaa
ttcagattatatttcgttttggcctaggttagagacctgctctggacatttctcaggagt
caaataaaatagaggctaatgaaaacagcaaattcatctcctaacaaaggctaacacacc
tcagtagcaaaggacagggtctcactaatggaataaaaattatgacatgaccaaatactc
tgttctcagccattccttctcatagatgcagtgatctcttaaagtccaccgcaagtgttc
cttcctatgtcctttttttaaaaataaaattatttctctgggagacaggaaagaatcata
tatgagataaattcacactcaagtgcttagtgactaatctttctttctaagaagaaaggc
agtcaacacatttttggtgtgtgaagatgatgtggctgaaagcagaatggaaatctggaa
aggaaatgaaagaacactctgtctttttcactttctgcttaggtcaagtcctagacacag
tacttggaaaaagaagagaaaaggagattctggtgttgtttttttcttgagtagtctgga
aacttgcaatgggtcaaatttgcagtcatgttcttgatttgaaagatatctacctgaaga
taatcgtagttttaaacattttattttaaatgttttaatttaaatgttattttaatgtta
aagcattggcatcaaggttttttctaaatcctttgcttttacaattttagtggtactata
catgaaagaaacactttgaaaacttaggagatttcgtcctttcatacttgcgaatttgac
ttttgaactatcattaagtctgaagtccaaattatggagttgactaagactgatactaga
taaaaaagtgtgcaaaaccatgggattaaaaaacctagtgagtttttctgtgtcattgac
gttcctgcttaactgagtattggagagtattacataattaaacataggatgtaccacaga
tcttaaaagtcaataacaagattccaagcactgtccatagttggtaaaacacaaagttcc
actttaaaacaacatttttcaaagcctctcagaaattagtctgctctcaggaagtcctgc
cgagggccgtcacaatgagacaagcttatggagctggcagccatcttgtgcagtgagaga
cgaagtgtctggctctgagccaaggaaagccaaagtgatcaatattacatcctgaaagca
ccaatggatcctttgtcccagaactagcgcttctgggagatgtgccagaagattcacatg
tgcacatatgtgcacacacagtaacatgatgattcaggaaattcagtcatatgggaagat
caaaagcacagcaggatattcctgtgactctggcattggtcagcaatacttcaacctcca
catccaaatatgaaggcagcttaaagagcctgcagatggaagacaaacagaaacttgaaa
aaatgtactaagacggcttatttttctcctgttgtccttacacctaccgtgaatactctg
gtgccttgccagtcactcctgcaccactttgaagtttgagtctgtccctgaatcctacag
agtggatgccagcctggcctgatctcacctctttaagccttctgcctccagcatgctcac
aagtgtttggaacatgtattggggatagaggggaatatgatcccagacccaggtccagag
ggctactagaacatgtcatgtgtctggcattgaacaagatcacattgccaatttaaaacc
atcgaagtgatctcagttttcttgggaaagaaaaaagaaagaccatgtgcctgatgaaag
aacaatgaaaatataacttacacacataaatatcatctgcctgaaaatccaggccatatt
tgggatcagaaaaatatattttaagtggatagtattaacagaagggcttaatcaggcact
cttgctactgttgtctttatggataaattttaaggacaggtggagtcaggcaggaagtaa
atattcaatttagaacattttcctacatttaatatctgcctctctcatcatgtttgcaat
ttttacagtctttgttatgaatagcttctcatcacatttctaagagggagatcatcataa
ttacaaccttatgttatggcagagcagaaagaagtgacttggcaaaggtcatgtggcaat
acaatgtcctagacaggaagggaactgatatatctggaaactattgtgagttgtgcattc
cagtgtgcatggcagaaagcaaggctcaagttgctgcagccaaagcttagagctttttct
gaagcatgagtgcttggtataggtatcaccaaaaagaaaaagaaattaaactttagtagt
attaacttgagcaaaatcccactggagaaatttccaaattactgttactattatgggtat
taggagtaagacagagaaaggataaactgccctttaataatagaatatttgatttggcat
ttaaatggttacaaaatctactctttggcaacaatttaccctgtgcaaaagtgttatatt
aattcaggtaaggatggtacctccttcatgagactctccaggggttctctgtgttcttgt
atggtccacgtggctatataatcagccaacacatatcctaggatgctgctttgcagtagg
aattagatgcttaaataattttagaaatgaaatatcatgaagtctataatttctacacaa
tgaatgagtcatttgcagatccttatagttattcttttcccaccaaaaagttcaagaata
aaaatcccctatctcccaccataacatcaacaagaataagattgaaaactcagaagagag
aaacaaagagattcatagttagtattttttcagaaaatacatgtttcccagtaagcaaat
ctccttataaatataattgattaaaaatgaaaaaaaaaactctgaatttactgtatgaac
tttggaatatttaaaatggagaaaccaagaattttctgtaatcagtattaaaattctgac
atatagaagtaaaaatttaaataacaaggtataggacaagacttttatttgatacaggaa
aggtcttactggaggagaatatgacccaaactggataaggacagacacatcttccttggc
cagatctgacaagtggcttttcccagttgtctcacaaaaaagaattacatattaataacc
catatgctttatgtttctaatatttaaaaaagaggtgattgtaaaatatttcaaacaaca
gaaaatagtacactatcaccagccatattttacatggtttagtatcttatcatattcgct
ttagatctaattttttgttgctgggcgcggtggctcacacctgtaatcccagcactttgg
gaggccaaggcaggcggatcacttgatgtcaggagtttgagaccagcctggccaacatgg
tgaaaccccatctccactaaaaacacaaaaattagcggggcctggtggcaggcgcctgta
atcccagctacttgggaggctgAAGCAGGAGAATCGCTTGAA
Primer
(+)CTGTGCTGTCATCGCAAGTT
(+)TTCAAGCGATTCTCCTGCTT


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