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Human element [ hs2729 ]


Position: chr7:134,619,121-134,624,806 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CALD1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAAAGATGATAAATGTGGTGGtggtgtgttggcttctgattctgtgcttgcatctaaac
tcgttcttttaattatctttcctctatccataggtctgcatgaggcaagaggcccataac
tccttacctcactcatgggtttgacgttgaattaaaaaaatgataaaagctggggtggga
aagagacatgaagaataatggtcagacatttcatcttaagaaggcaaaaacaggctgggt
acagtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacaagg
tcaggagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaa
aattagctgggtgtaccggcacatgtctgtaatcccagctactcaggaggctgaggcagg
agaatcacttgaacctgggaggcagaggttgcaatgagctgagattgtgccactgcactc
cactgggcaacagggagagactccatctcaacaacaaaaacaacaacaacaacaaaaagg
caaaaacaaacccctggaaattaactggtaataaagagggggaaaggaactggttggaaa
ctttccttaaaaaaaaaagtcaaaaccctgatttgccaacatgtagacctcagcttaatg
tagacttgcagaaagccattaatttagggtagtattgatttatatttgactggtaattaa
gagcatacatgctgcttctttattatctgggtgacacaaattcatgtggcctgaggaagg
gtggaaatagtaggggggaaatgtttgtaagctttgagaaagattttttttctgtctgca
agactgcattgaaagcactgtacctaatcaccaccacaccaccaccaccactcctaaaaa
aagaaaaaaagagatgctttcacattcacctttccagagcaaattctctgtcactaagcc
tgcattgcactgaaggtatctttaactcctgcttctgtacaagaggctcatgaacacagc
taaaattgagaccatgagcaaagtgcaccaaaccacacacgaggtttgtaaacacacgag
gagtgccacatcatgctagatttcagtgagcgcaatggcaggcacacgagaagatgttgg
ggtgggaagaaaatatcccaccttgctgtttagaaccactgtgctgtgagcgctgagacg
gcagaagagaagccatcccacgcagcacttgcaaggcgatccgagcaccctgtcactctt
gtaaactagaaagggcttcttttacttgtgtgaccttaccattcttgaaaataaaaaggg
agaagagaagggaactaaagtgcaagctaaaagagaaaagctccaagaagacaagcctac
cttcaaaaaagaagaggtaaatatgattgaaaagtaatgatcgtaaagcaacagaaaaag
cagtcagtgttccaagatatctcaggtctgatgatctcaaaattgtaacctcatatccag
tgtatttcaagccatgactcacagtccactgaatagtgagatcagcttagagtgtctcaa
aattaattaaatgtatcagtcagcattttttaaaaaatgaaatggatagaagccatcaga
gggcattgtaggtagtaagtattgcattgtcaggtaaattgtctttttttctgtgggacg
tcatcaaaaaggcttgaaaaacactgctggaatcaatttatcctgttttctattcttctg
aatgctaattttttttccttgagccattctactttcatttcaatcatgaaatatttccaa
ctggccttgattaatgctttaacttttcaaaggaaaaacacccacacacatctcagtaga
aaatatggtgaactgaagatgatatttggttttcaaaagaaaagtttggccaaatgttct
gcattgcatttctgaggcacacacaggagcgggtgccagggtatttgactgtaggtaagt
gaacaaggagctatacagatagaatggcacggggtttgacagtaatcagaacaccacatc
agaacacttgattgcacttcaactctcatgctgtgtttgccccaaataatcttaaaaatt
gtgactatatcgaataagttcacaatacttattaggatgtggtgaaactgaattatttga
agtaggaagacccgaagttcttcgcctatgagactggtgaagtgatttgtagccaacatg
ctccaacccatctattaagaaaactatggcatctattaagaaaattcaaaatcttaaaca
gagaaatccatatttagaaaacatggccagattaaatagggggtgggttattttcttaaa
tacgttttgtcaatttcacgtgaaaaatgaaaacccctagttcatgttacatattacatt
tctgttaagatgtatgttcctctgtttctaatagaagttgtggtggtttggaagtgaaaa
ttgaatgtgagcacaggccatgtaaaggaaggagaaagtgtaaatgttaataacaggaaa
actgaatttagctctcatgaggcagtcaaggaaatcattcattgaacatgttgggaaata
cttttcatttggtgaccaaatacctacaaattcatttacaaaaaagaaaaatgaaagtta
cctcagaactaaactcagaaatatgtcccacatgggttcttgtaatgtttcttggtgaat
gtctttatagaaagaagtgggcatgaaatgatgactcagtaattaaacacatgggggaag
ggaggctgtagaaaacactggattctatatttaaaatttcattcagttcactaatttgtt
tttactgaccaaagctttctatacctatgtagagtgtctgagaactagaagggcccatca
gttgccactcggatgatccttttgtctcttttcagataaggccccagttcaacagcgtcc
tctgtgtcaatcagatactcccaggaatgagtgagccctgccgttttcccaagttgcccc
tcagcacattccagccagttccaaaacttttggcttgtttttgacacaaggccagataag
ctactcaaactggtttttttaaaaaaagaaaacaaccccaatctatattccttttttaat
actgtgtacataacctgctgctcgaaagactaggttttcccctttccagctagttgtgtt
gtttctttatgtagacagctttaaatcatgtttacatgattcagccattttaaacaacct
cttcctatttttttttcctttttgtacaaaaaaaaaaaaaagaagaagaaagaaagcaac
taactaaaacctttcctttcaaggatttatgcagcataggatagggcaaccacaagtaaa
cacaaacatcacgtgagccttcttaaagaaaacatttccagaaatcactccaatgtctta
aaaaacacacaaaataaaacctttctccactgcagtttaactgtggcaatgagttgcaga
cgatcaccaacactgaaacttaatttagcttttttctctcctctccaatcataaaaagtc
tctttttggttcttcatgcaggagctattttctttcttttctggcctctaacaggaaaac
agagtttctagccgagctgctcctgaggtattaaaagtgatgttcgtgtcatgcggatca
atcctgcccaaacattagtgtgcatgcaaatcacctggcagtcttattaaatgcagaatc
tgattccatgaggtccatgttgtccgtggaccaaacttgcagtagtagcgaggagtctag
aagacgtccatgttatagaaattgaacccaggaaaggatttggggcttatgaagctaaca
aaagcacgtaaaacccagcctgagaaacagtagctacacccagctcttgttgctattctg
gaaccaaataatgcaaaatatgctcgagacacatctcagttcttgcttgcttgactttct
gagtgtctctctggcacaagggcctgtcatttgaattcccatcccccacctcatccccat
gtattattccactggatatcccaaatatctagagtttcaaaacccaaatgatcccatttg
gccagagccttttttatgagtatgctaatgttatctgtgtatgaagcacacaaacttttt
caggatacccggctatctattaatccttcagcacggacgttctccatggtaacagtctga
cctataagatctaatgcctttcccagggggctcagaatcccatgagtttgggttaaatct
gccataacatctaaaaaaaaatgtaaaggctctacggaattactttatttattcatttcc
cagaaagagaaaataattttcagttgaactcaaatcgtcattattacattgacaaggttt
ctaaggttttccaaaaagaatataagcctgccatccactatagcctttgccaataaaggc
agagcttgaaaaaaggggggattttttttctgttagacatgtatcatcttacaaatctat
tttaaacacttttgggaccagtaaatcagatataatacatttggggagaatggaaatttt
tctgactgcaacataggataaatgagttaaagggaatgtctccatgcgtagtgctccaca
gaccgtgagctcctactcggaatttatttcatggttatccctaaaatgggtttccctcac
atttggagccacagatgcttcttaactagaacataaactccagtccatggtttctggggc
taagtctaacaacaataggccaaaatgagaatatattttgtttcctccttcctgtccagt
gaatactgatatattcttgggcaaggacagccatcagggagccacagtgaagctgtcatt
caggctatgagcttgctccttttttctgtagcctctcatgacccatgaggacccaagagg
gaaatgacaggatgaaaaattcggaaggaatcatctggtccaaccgcattttttcacgta
cttgggaccagcatcccagagcagtcaagtgatttgtccaagtaacacaactagtttgtt
gtcagcactggagccaaaagtcaggtttcctgatttacagacaaagctcttgcagagaat
ggcaaagtacagcccccattttcagtgtgtccgagggacatcctaggtatataccccatg
gtgaaagattgaagtcttaactaattagggcagcatagaagtgaatccctagtaattaat
cagataatacccaaagaagacaatcaaatgacttaaaacttatcaataaagagcaaaaaa
ctgtgctctgctttgtaaaacatgcactttaggccaggtgcagtggctcacacctgtaat
cccagcactttgggaggccgaggtgggcagatcacttgaggtcaggagtttgagaccagc
ctggccaacaaggtgaaacccattctctactaaaaaatacaaaaattatctgggtgtggt
gttgcatgcctgtaatcccagctactcaggatgctaaggcgggagaatcccttgaacccg
ggaggtggaagctgcagtgagctgagatcgcaccactgcactccagcctgggcaacagag
caagactctgtctcttaaaaaaaaaaatgcactttaggagtaaatcttcacagagtatct
gaagaataggtgagaagaggtgagtGATCAGGTCAGGATAGAACCT
Primer
(+)CCAAAGATGATAAATGTGGTGG
(+)AGGTTCTATCCTGACCTGATC


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