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Human element [ hs2725 ]


Position: chr2:43,537,731-43,542,588 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: THADA(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCAACATGGATCATAAACTTATGaactaaaactgtaaaacttccagaggaaaacatggg
tgcaaatctttgtgactttggattaggcaattattttagacatgaaatcaaatgcacaag
caataaaaaacagatacaatggacttcaaaactaaaaacttttgtccatcaaaggatatt
atgaagacagtaaaaatccacagaaagggagaaaatatttgcaaactgtgtgtcttataa
gggattaatatcttggacataaaaagaacccttacaacttgagaataaaaagagaaataa
ctcggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggc
agatcacctgaggtagcgagttcgacaccagcctggttaacatggtgaactcctgtctct
actaaaaatacaaaattagccaggtgtggtggcacatgcctgtaatcccagctacttggg
aggctgaggcaggagaatcgcttgaaaccgggaggcggaggttgcagtgaaccgagatcg
tgccattgcactccagcttgggcaacaagagcgaaactccgtctcaaaaaaaaaaaagag
acaactcacttaaaaatgcgcaaaggatctgaagagaccgttctttgaagatatataaat
gaccaactagcactagaaaagatgctcaaactcattagtcattagggaaatgcaaatcaa
aagcacaattagatcccagcactaggatggctattaataaaacagatggacagtaagagt
tggtaaggatattgagaaactggaaacttcatacactggtggtaaaaatgtaagatggtt
gcagactctttggaaacaatttagcaattcttcaaaaagttaaacttagagttggcatat
ggcccagacattccacttctaggtaaatacccaagagaattgaaaacacaggtcccagca
aaaacttgcccatgaatgctcatagcagcattattcataacaacccaaaagtgaaaacaa
cccaaatgtccatcaaactgatgaatggataaacaaaatgtgatatctatatactggaat
attattcagccataaaaagaacaaaatgaccaacatggatgaaccttcaaaacatgttaa
gtgaaagaatccacacatgaaaggccacaaaggtatgattccatttacatgaaatatctt
aaatagactttcaaaaactacttgcataaaaatttaactgacatgggcaactactttcag
attatctgtgatgtgcagctggagctgggaaaggcaggaacagagaacactgaaaccaca
gatgtggccggtcatggtggctcatgcctgtaatcccagcactttgggaggccgaggcag
gagggctgcttaagcccagaagtttgagaccagcctaggcaacaaagggagacctctctc
tacaaaataaaaaattaaaaacaaaaacagaaaaaccactaggttggcatagtggcatgc
gcctgtggtcccagctactcaggaggctgaggcaggaggatcacttgggcccatgaggtt
gaggctgcagcgagccatgactgtgccactgcactccagcctgggtgacaaagctgcaaa
aaaaaaaaaaaaagaaatcacagatgttctgagaccctagttgttgactagaacggtatt
tcactcctgggatgaaaatgtgggtagaaggtttcatgacacggttctgccacagacaca
actctcacattatatgaggcctttaactttggtcacagaaatggacggtgaataaggagt
caggaaagctcacccttttcactaaccagctgtgtaaccttgggtaagtcacttaaattg
ctatgatctctaaactaaatttctaaagaattgtgggcctctgtactcagcgcaaggttt
ggaattaacagagtaaacaccacgttaacctagcaatctaataacataccctatattatt
ctgacttctgaaagacagctaggaaacatctgttattttagaagctcactgttccctggg
aaagataattttggcacaagcagcagttcagatgacagttccagtgttttggggaaaacc
aactaatttattgacaacaaagcctgttttttttttttttttttcctcctccttaaaatt
tcatagctataggcccagaaatacaaagtccccagaagactctaaaaatatgttctcaat
tcctttttatttcccacccagagctgagaaaacagcaccaactgtgtcatattaaacaca
tctgcatccaacactgataaagtgcatgaccgaggaacagataagaattgttttcaattt
gttaaaatggaaatagttaaatttaacctaattagactaaataatcaaagcaggtgtttg
taagatgccagtgtttgttttcattctctgtaactgttcagctatatttcccaggaactt
aggtaaaggaaattaatatgtcataaaaatcactgacctatttattcatgtcacatatgt
attattcatgttttaggcagtacaaatacagggcattgttgaacatttctcacagatttt
accatttaagcatcatcaacatctaagctggcctgcagaggggcttatgttacctaactt
ccattatataaatacaagcagtaataaatgagagcctgtcttctaatcgtacactgatct
acagagcgcactgacttggcatttagactatttagggtttctgactccacttgcacaagc
tggtcacttttaagacatttaaaagaaaaataataacaataataaaagttatattccagt
taaaacaaaatgtttattgcacttggcagagtgatgagatctgaactataaatatcaact
aacaaagaaaccacaaaatgtagtcaccagcagcctggtattaggaagtgttttgtgcag
tggccataggtccactttccaagggaaaaagggcaggtggctgcccgggagcagtcaagc
gtgctctttctaataacacgctccagtcctgggtaggctctcgtattattccacacaccc
tcaggatgggaaacagaaacacaagcaagaaaggccccataaaagcctgtgacgtggaag
ctcctgaaaagggggtcccttctctgtggcctgggcattctgcagcagggacagaagcct
gggaagttgagtccacgaagagggttctcggactcccttccctaagcgagtgactgatgt
ttcctgactctggccctggttgtgccgtgaggccacagtgagggcagctggagagctcag
gatctgccaccttagcacacatgggatgttaggcacttctcgctatgcctcagtttctgt
ggtctcatgaaggaacattagtactttcttcattaatgcacataaaatgcttggcagtgc
ttggcatagagatagatgctcaataaatgttggccactattattatagccccctacaaac
aaggaggatgagattgaaaacaatgtttcctaaaaatgagggtataatgggcatcctatc
catatttcaggggtaggaaaacagccttctgagatcatttatatgaagggtatggatgga
caaatccttatcagcctaaaatattcctatctatgattgctatgtcatttctttaggatt
aatcaatcctcttcatgagtcatatttcaatatattacacatacacataattataaaaga
accaagttgcataaaatttataaaatggagactaggaaaggaaaaacccgctcataaaac
ccaacaagagagcttaaaatgaaagtctgaaagtgcaggtaggtatttgtttaaatactt
ggtaaaagaaaatgttcaattcagtagctgtgacagacacaattttaaggggtgtgggca
taagagaaacagaaagtccatctgtcaaaggggtaaatatttagtcaagtcttagatagt
atttctgtaaacagaaatttcaatggaaaatttccaacctgagagcaaataatttaagat
gggtttaatataagaattaaagctctcgtctccatgtcgctgcccagcctgagacccagc
cctctgagtccttgtggcagttcggctttttctttcttgttccctcaactacaactggac
actataattttctttccattccagcaggaaactgatatatactaacgatgacagctggat
tcagaagaggaaaaagaacacaggggacagagagtccttgtgggtttaaaactcaaaaca
aaacccccagatttgaaaattttaaaacctagttaatggctgaggaaacctcaaatgatt
gggaagcactatgataaaagtttgaattacataaaacacatcattatcttaagcttttct
aataatcttctctgcctttctccttcactgtttttctccttgtttatgcccctagccctt
caacgtggttctaagacatgtcagaggtaggaacagccttccaaggccatttacagaata
ggactggagaggggatgagcagatgctcctccatccaaaaaagtttccctgaaattgtta
ttacttcatttcctttggaataatcaatccctttcaagattcatatttaaatacatttaa
tttaaacatatgtatatacacataatgaaacagaattatgtttcataaaattagtaaaat
agaaaataagagaaggaatctcccctgtaatcccaccattctaaaataattccttttacc
atagcgctggctttcattctagtctgttcctccattccccactccctacctcccaaaccc
ctaatattgattatcaaaatggctgggcaaaagcaaagTGAATGCATCTCCAGTTACA
Primer
(+)CTCAACATGGATCATAAACTTATG
(+)TGTAACTGGAGATGCATTCA


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