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Human element [ hs2720 ]


Position: chr1:19,715,332-19,719,713 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CAPZB(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GACTTCTGAAAGCCAGTATGCcaggtactaaccaaccccagaaaaacatacatttaaact
ggaactcaaaaactggcactgcttgtcctacagtgaaaagcctctgggacttgatatggc
caacggactccacccaagcaggcaccatttttgccttttggatcaactcttaagctgggc
catagttttggccatatttccatcagcgctgtttcttttgatcaaagataatctgctctg
gaataataacattttcgttgtcatggggaatgagaaatgtggaataatacatggtgtgcc
cacagacttggaccacagcagctgcccaaaggtgcattagtcacgacctggcaccatcac
tgatcccgtctcatacccacgccgtccctccacctctgcccgaaactcctcaaacaacca
cacggtcccattcaccactccctgaacatgcacgtgcattcccccacttaaacatcttcc
ccattgagggttgctggataaaacagagggaggccagttcagtctgaatttcagatacac
aatgaataacattttagtatgactacttcctaaaggttacatgggtcgtgtgtttttttt
ttctcaatgagatggagtccagctctgtcacccaggctggagtgcagtggcgcgatctcg
gctcactgcaagctccgcctcccaggttcatgccattctcctgcctcagcctcccgagta
gctgggattacaggtgtgtgccaccacgcccagctaatttttctatttttagtaaagatg
gggtttcaccacgttagccaggatggtctctatctcctaacctcatgatccacccacctc
ggccacccaaagtgctaggattacaggtgtgagccactgcgcctggccaggccatgtatt
tttatttgctaaatctgacagccaatccccactgctctcttaaatcttactgatccttca
gggcctggcccaaactccaacttctttatcaagatgtcaaattcttcagaattcctgcag
taacactaatatcaactgaatcctaaatgctttggggatggctgttctaatactgccaat
gactttcaccttactccttcctcaccacttagcatttttcattgtgaattgactccacac
ctacagaggccaagacaggccctccagcctcagcgcagcatcacgcccgctgcagcaggg
atcagtcaatgcatgctgattccatgtaagtggatattaatcctgtggtctgaggccata
ttacagaaccagaatgaaggcagtgtatctctgtaatctaaccagtccctacactcatct
gaaccccggcccccgccccctactcatgtcgagtgcttagagcagtggaagaaatcacat
taagtgtcacagaccatgggtttgtacagtgatttaaatgaaacgacaggtccaaacaaa
gccgagagttcactttggggtgcatgtggcactggctctgtcgcctccaaagccagggag
ggcctctgaggaggaggagcggtgctgacacgcggcagccggatggtttctgtctaaacc
acccatctgaactgcctaacggccttggagggaaggttcagataacaccaaaggtgtcag
accaatccaggctgttggggggatttaaacataattcccagtgacttggaataataaaca
ctacactggtcaggacagtgcctgccgtctttctggtgggagttcagggctccaccagtt
cctctgctgccacaggagtgtgcccaccccagggagcaggagccacaagtccttcaccac
cgatacttttgccgggctcggtggtacccaggaggccactggaaagacgggtggggagtg
ggtaaagtgaactagggcagggaaaagaaaaaaccccagaaggtagaaggtaagggagag
actaggatgccattggcaacggcctcaggtgacacctgaataataatccgtggaaggacc
aggtgatcgtaatagccctgccctgcgtggcaggcactatgctagcagctctccctgccc
ttccctatgatcctgacaatggctcttcacacagacacgcactccagtccttgttttaaa
gaaggggaaacagggccttagagaaataacttgaccggagccacgcagctacgggccaat
gtctgaggaaggacatgcagttatatacagcacagctaggttcaaaaagaaactgctttt
cccaaactgaacactttttttttttcttaaatcatccaacccaacagctgatcacacgaa
gagatacaaatcagaagtttccggccacaagtgaggttcgtgtttgtgccgccatatggt
tctactttgcctcttcctcttctccattagttattaatgttgaaaaaaattgttcaacca
gaaaaagaaacttgagatgaacccttaaaaaaagcacaaaagccagagcagctcagaccc
acggagtctaacccacggcgcccttgtctttaagaagtgcacccttgtacctcggttttt
taaaaaatggccaaatgaacacattccatcttttgatctgcctgttggccgagagcccac
caccagcaagataggaatcaaaaacagattctgcgtacttgggtgcactcagaggaaact
gccacgccagaatgctgcagctgccgacgtccagcagagggctctgtgacaatttgttcc
ttttatttttccagaaggcccaaaactttcttaaaaagataaaagagcatttcaagtggc
acatacactcgtgtcagaaacaaaatatacagtgtggcattctgtaaaaacaccaacctc
gaaaccgaacaggttcaaatcctcggtcagtcacttgctggctgagtgtaaccttcctaa
gtctctggaactgggggttacaacatccatgtcaaggagaaattcacactgttccataaa
ccccgaatgcccgctccaggcccgtgtcaggtgcaagggctcagcacgggaagagatgga
catgggcggccctgctctgacagcaaagtccagccacagaggcatctccaagaggcaagg
gtaggccaggcatggtggctcacgcctgtaaccagcactttgggaggctgaggagggtgg
atcacttgagttcaggagttcaagaccagcctggccaatgtggcaaaaccccatctctac
taaaaatatacaaaaattagccaggtgtggtggtgcatgcctataatcccagctactcag
gaggccgaagcaggagaatcacttgaatctgggagatagaggttgccgtgagccaagact
gtgtcactgcactgtagcctgtgcgacacagagagactctgtctcaaggtaaaaaaaaaa
aaaaaaaaagaggcaggaagcgaacctgcaggagacgacagaagggggttgctgtggggg
caagtcagcagtctaggaggtggcacagagatgacatgtgaataatgaccaaggagccgg
ccctccaagactgcagggaaaaataacaggggcatcccaagaagagggaagagctggcat
gaggctctgctgcagaggccactgaggcaagtgcaagaacagagaggagcaaagcgcggc
tggagtgagacccagtgaggcagcacgcagcacctcctgggtcactccaagtgtgagggc
aggccctggcacactgcttttcttaagaattaaaaaaaaaaaaaaaaaaaggccagctgc
ggtggctcgcttgagatcaagagttcgagaccagcctgggcaacagggcaagactccgtc
cctactaaaataataataataaaaatagccaggcatggtggcatgttcctgtagtcccag
ctactcaggaggctagggtgggaggattgtttgaacccgggaagtcgaggctgcagtgag
ccgtgtttgcaccacagtactccagcctgggtgacagagtaagaacctgactcaagaaaa
aaagtgtttacttatgtataataggtaatacattcacataggtcagaattcaaaaaggta
caagagcacatgctgggaaaggcctcccagtgagggcctgcaagctggctgtcctcgcct
agggagatggcctccaggtcaggatcccttcagtggggctcccttcaccggtctgtccag
atggacacatggcctccaccagcctatgagagatgcaggaatccccaccccaccaccact
acttagtgtagagaaaacacaagcctgctccccaactccccaagggcagcttcgttacag
ggaccccagtttgtcattaggaacactgagccacggaagcacagcttcatgtagccgagg
ctggagcttccgacccattttgcctaatggctctctgagcatggCCACCTCTGCAATGAG
AA
Primer
(+)GACTTCTGAAAGCCAGTATGC
(+)TTCTCATTGCAGAGGTGG


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