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Human element [ hs2716 ]


Position: chr5:172,311,642-172,316,225 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ERGIC1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTTGTATTTTTCCTGCCCagcctagaatcagccattccaaggagctctgactgctttaa
gtagagaatagtgattagaagccaaggtttgggtgctcgttacactcactgctattgggc
tgttgctgttgctggatcttctctatggaaagagctaggaaatgtatgtatatatgatac
gtatatatacatgtgcatatttcagtgtttgggtatattgaaaatgattaattcatactg
atatttccattaccactataataccatgttttcacctcccttccctgacagtgaggcacc
tggccccactatccttgtacatgtacatgtttgaccagtctctctgtatgtaacaatctc
ctatctctctcttcctcaccctgactgaacttagacactctgccccgagccactgctgcc
tcctcacccagagcagcctctgacttccagttttgaaacaatggttcttatattttttat
tttttaatttttattttatgtatatttttgagatagggtctcactgtgtgacccaggctg
gagtacattggcaccatcttagctcactgcagcctcaacctcccaggctcaagtgatcct
cccacctcagcctcctgactagctgggactacaggcgcacaccaccatgcccagctaatt
ttgttcatttttttttgtggagatgaggtctctctatgctgcccaggctggtcgcaaact
cctattctcaagcagtcctcccacctcagcctcccaaagtgctgggattacaggcaagag
ccatcgtgtacagcagtttctgtatttttttaaactgcgaggcccagtttctgcttgtcg
gtccctgatggtgacctggacaaaagctgggctgttagccacctggggtatcgagcccca
ggacacggctgtcatgctttaatctgcatgggaacttttagatcccctgtgcaccccctc
atttcatactcagagaagctgaggcccagcaagggccagggattttctgaaggtctaaca
cgaagttggggtggagtgaggacgagacccctcccgctgcagccctttcctgctgctcat
ttctccagtcttaggagaacccacatgccctccccactggcccaggctggccttcctatg
acacgaggcggaccacatcctcttccagctccgcaaggcctctccgctcaaatggtcacc
gcctaggccccaggcctcatgtcatctgcagacgcgtctcatttgtcctgtagagtgttg
gcccagcatttgagaatggtgaacttccatgtaaaattccacatttttggcttctcttgg
acactcagaaggtctggcctcctgagcccgcatctctacctggcaggtgtcagctggggc
tcggtgatggccgcctgctggtttgttttctctccattccctctccccacccctacctcc
caaatttgctgacctctcacagtctcccacagtagaccgcccgccggcccccatcgacac
ttggtgtgagactccctagccacagcctggccctcaggaccctctcctccagccccgccc
cagttttccgtcctcctctccctgcacatcgggctgtaccctgtgccggagagaggacag
cgcccagcttcccagattcggtcctactctgtctttgcttctgctcctctccttgcctgg
gctgctctttccctccacccatccatcttctccccctcctgctctgtgcacacatcaccc
cctgtaggaagcttcaccgaggaccccaggccaagtcaggtaccccctcctgagttaatc
cagcacctcgtgatgaggatgccactaccttctccttccctttctttgcctctaccgcta
aactacaaactcactgggccaagggttgatttttatctccttgcctaagggcctaaaaga
gggggtgtgttagtaggcactgcgtaaatgtttgtcaaacaagcgttaataataatagta
accacaaatatccacgtggcatttctggggtgccaggctctgcctaagtactttatatgt
gctcagtcatttgagcctcaccaccatgctgtgagatagttactgttgttgcccccactt
tatagacaaagaaactgaggcacagagaggttaagtgacggtcccagggtggtacagtag
tggtcatagttgagcccaggcatctgattccacagcacatgctcttacctctcacacacc
tctcagtgttaaagcggcccccactttctgactaagggatatgagtaaatatggacaggt
gagttgcagagacccccaacctcccgaccacaccccagccccagcttctagtaccctcag
gggcacaagcacaggtgactgggagctaagcaggcggcagagaaagtggtacctttgaac
ttggcagcccgcaggaatttttctcccctgaggtcttaggaaactgagcatgtttcacgt
gtaattagggtgagcacactgattcaagcatcggcccttacgcaaggtttccaaggcatt
gcgtcgggtttagctgggcatactcttgtttcccaatcaccaaagaggaaccgcacacca
gcctgtcacccccaagggctggagccgccggcctctccagcaagtcaagttctgtctgag
agctgggatgccgtgtggactaaggagggttctgtcgatcaaactctgctgtgggagaac
tgtctgctacgcaggttcaagtgaaggaaacgaagccaagtgtgtggggagcctcccctg
cgagctctctgcgtcacatcctttacagacacttctttccctcactcctttccgtggcct
cacagggtctagtactaatggtcccatttttacaaaggaggaaacaggctccgagaggtg
aagtcgtttgctgaaggtcacatggtgaacgagaggaccagccgagatttgaaccagggt
agtctgattccagggtcttaactcttaaatagctgaagcagagccagaattaaacctgtg
tctgtctgatttccaaaaccctgaattctcccactacaccacacgatttccctgtgctct
ggtgggatccataggaaagaaagacatctgtctgcttctgtgagggaaagaaatcacaca
agacaggaaccagagccatcaccagctgatgctaagaccgtgggctcctggcaggacttt
ctgttaacctcatgccttagcattcttaagaagagtctccatgaggcagacagcaggagc
tggggggtgcagccggagtggaaacaggaggaggcaggaaagggaagagggggaggagag
gtgacgtggagcaagaatgcagcatcgtcacataactcgagcagggctgtgcgtttcctt
gcttcctctagcgtcagagtcacccccgattcaggggttccatacattccataattatcc
agtgcctactctgcaccaggcccatgctagggtttgggaacgtggcagggaacaaaacct
aactaggcccctgctctcgcagaagttacactctgatggaagacccaccgatgagtggga
gggtcatctggtggttcacgcctgtaatcccagcactttgggaggccaaggtgggcagat
cggttgagcttaggagttcgagaccagcctgggcaacatggcaaaaccccgtctctacca
aaaatacaaaaattagccaggcatggtggcacatgcccgtagtcccagctacttgggagg
ctgagacacgagactcacttgaacctgggaggcagaggttgcagtgagccaagattgcac
aactgcactccagcctgggtgacagagcgagaccctgtttaaaaaaaaaaaagaaatgtt
atgaagaagagatgacaaggggatgtgatctaagggtgttgtggggagcaggggttccat
cagagaagcatcttggagaaagtgtcctgaaagagcagaaaaactgtgggaagaaccatg
gtttgttgaaccatgtgtcacacaagccagcaccactgcctgctgccttgagacccaccc
tttgtgcccacctcactcctgttccatttgctctccacaggtttgacatctacaggaagg
tgcccaaggaccttacgcagccaacgtacaccggggccattagtgagtagccaacctctg
gccatgccctctgccccatctccactgcctgtgcctgctctctctgtgcagatcatctgg
gccagggaggaaagaaggaaagacaggagggaggaaagaaatgctgagcatcttgcgggg
gcccttcaagcatttcctcacttactctctatcctcactgtaacccctcaaggcacaggc
accatctggaaggacatgaaagaaattgtcaagagtagctgccaggctgggcgcggtggc
tcacgcctgtaatcccaacactttgggaggccaaggcgggtggatcaattgacatcagga
gttcgagaccaggctgaccaacatgctgaaaccccgtctctattaaaaatacaaaattag
ccaggcatggtggtacatgcctgtagtcccatctactcgggaggctgaggcaggagaatc
gcttgaAACAGGGAGGTGGAGGTT
Primer
(+)TCTTGTATTTTTCCTGCCC
(+)AACCTCCACCTCCCTGTT


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