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Human element [ hs2709 ]


Position: chr17:78,041,811-78,044,086 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CCDC40(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTGAGGCCCAACTTTTATTTATTatatttttgtggttcttgcaatggagtctcgctctgt
cccccaggctggagtgcagtggcaccatctctgctcactgcgacctccgcctcctgggtt
caagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgcaccaccacg
cctggctaatttttgtatttttagtagagacggggtttcaccatgtgggccaggctgatc
ttgaacccctacctcaggtgatccacccgtcttggcctcccaaagtgctgggattacagg
cgggagccactgcgcccggccagtcttttaaaagtgcaggccgtgtagaacattgtgaga
agtataaactgtaattacagagatttgctgtttgcacccagatagatttgaagaagcaac
ttggagacaggtttaatagatcagggccattattacagaaataaattattgcatagctta
ggacttccaagctaggagtgcagtgactgaactatacctcaaatattgaccttgagatgt
tcagatttgtagagcatcttagaaaatggtgacattcctggctgatggtcaggatggtgc
ataccaggccggtaccctggtggctgtctgggcatttctggagccttcaccctgcgagat
ccccatggggcaggaccccctggcccagaagcttggttttgccatcacaccgagaaggca
cacttgtcctggagttagtttacatgaatcgagctcaccagagcctgacgtgtaactgag
tataatagcccatttatgtgcatgatgaaatataaacaccaaagaaccgaatgctccacg
ctcggactagcagattcttatctgtgggggaggacacaggagcggatgacacagacccct
gctcagggaccggctagagggcggaatgcctgggccccggccctgtctgcttcctgcttc
ttccccgaagttcatggcctgtccgtccacatgggcgggaggtgtcccgcgagcagccct
caccctgaccttggctgctttctccattccattccccacccctcctccctcctgacaccc
atggcattttttcagataagttaatacctttgattaggttccagccaaacctcacccttt
ctctttccccatgcctttgtgtctctcttcgtctgatgtcgagtctacaacctaatgctt
tgaagacagactgacttccccgtccttggtcagggggttgctgctgcgtggggggggcgg
taaccataatcttgcccccgtgtctcatacacaagctgcaagcttagctcagaagctgtg
cctgtcttggctgctttttcttgctgtcttccctatttttgcaggagttttgcacacggt
cataaaagttcaggagaaacatgaaacgtgttattctgtttcctgtttaagtcgacctga
ggaagctgaaggggtcaggcgcggtggctcacgcctgtaatcccagctctttgggaggcc
gaggcgggcagatcacgagctcaggagctggagattgaaaccatcttggctaacatggtg
aaaccccgtctctactaaaaatacaaaaaaacagccagacctggtggcgggcacctgtgg
tcccagctactcaggaggctgaggcaggagaatcgcctgaacccgggaggtggaggtggc
ggtgaagcaagatggtgccactgcactccagcctgggtgacagagcgagacttcgtctca
aaaaaataagaaagaaaaagaaaaaaaagagagagagagagacagagagagagagagaaa
aaaagaaagaaagaaaagaaaagaaaactgagggcttgccctaatctcctagacttcctt
ttccctcagtcctgatgatggcagagacgactcctcaaaggctcttccccttggcatgga
gtgctggagcctgccctagggagggaggacaggatggagcaagacactgaacgcagaatt
agagctaggcaacgagcgggtgatttcactgtttcctgggtaacaagccccaggctcagc
tcggtctggtgtagcccctcaaaggggacactgtccttgcccccagttgatggaggagga
aggagcggaaggcagtgtgggatgggttgggtgtgggcattgccacagtgtccccagcag
gcctccttctagcctggggatctggcaggtgggtcccagtcaccaccaatgccccatata
cccaaggacactggtgacccagcagacctgaggCCACAGACCAAAGACAGAGTAAC
Primer
(+)GTGAGGCCCAACTTTTATTTATT
(+)GTTACTCTGTCTTTGGTCTGTGG


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