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Human element [ hs2655 ]


Position: chr9:89,421,323-89,426,045 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ZCCHC6 - GAS1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACTGACCCTCCTCTCCTCTacagtgctccaatcttcatcaccaagcctgactgggcagc
ctggatccatctttcttaggataggggctcataacaggggcatccatgaacttgactgag
aaaaaacatatatatctctacttttgacctctagctgaaattcagcatttccttcaatta
tatgtgaccagcaacaactgtaagagcactacctgtgactttgtcaccaacagaaatctc
agatcttttcataacctatacaattgctacaaatatctgaaaacattggtttttgctctt
cagtactttggaattatagtagtaattaactcagcaccagatcttgttatttaaagagtc
aataaagaagcacacatactaaaatatatattgagtgttttaataatattttgacagatg
cattttgatataattgattgcccaggttatcctatgtatttttgctaaattcatataaaa
acactattttgagaagttacccataagcttcaccagactgctaaaggcatgcatgggcta
gaggtgatatgtccccaaacttggcatgacttattcccttagtagagacatcacggaact
ggctttttactttctgtgttaatttatttccatcaagcatgtcttcagtgttataaattt
agaatctgattatattccctccttgcccctatatttcacgtctgctcccccatgggaaaa
aagcagacaagctccgtcactgttcaaggctcacactgtccagggcctcagttgcatcgc
aggggcagatgggagcatggatacttcgtacatgggccttcatggtgctcttcacactct
gtggtctcaaatgagcttctttcttcttttcagttaaagattaggcaaaaataatcaaat
gccctagtttccttatagctgcaaattgttttgaaaaatgcaatacagacaccgccctcc
cccaggacaattttcttcttcaaaccaagagtggggggaaaatgtcatctaaatgtgaat
ctaaaatgttgatctaattactgaaccccccaatatttcaaaggcttccaacattttact
tctttttccctcttgcttactgtctgttacagattctcaggcctgtttctgaaacctccc
tcgcctcactctgtctctcagcctttccaccgtctgttagagagaatttcagagttcaaa
tgagaaaaaaatcaccacatcgacacgtccaaatgcttatcgctgtctttggcagcattt
ttgtataacaattcaagctacgttctccgtttcgacctcgaatcatttataaaggcaggt
ctctccctgacgacgcagggagagaataggctgccagcgtgggtggtctggggctcagga
gcccaaactcggagggaacagatgacatcatggattcacatggcaggtttatgaagctgc
agttcagctctccggagcagtaggcccaagttgctgcattatctctgctagagcattcaa
cgctggacagacacgggacagggagagtaggaaatgatattttttaacttgacattcagg
aagatttgaagatttacaagcattagcaggatacttctgaagctctatacactgggggaa
gggaggctgggctcattgcacccgaatgattttgcaaaccggcacacctacccgtccctt
tgcctgtctgatttgctaattctgttttttttttcttccccctcccaaaaagactgttat
tggccttttctcagacttctgttaggcattctgggctggcacagaggatcactgaacacc
actttcttcacgggcctgcaggaatttcaatctggggtgaggtttatgcaaacacaaatt
aaatcagacatccatggagttttcaccagatttcaaggttatcggaaaacacctgccctt
cataagagaatgttcctgaatcctagcccagggacccactgagctttctgctcatggtaa
ggaatctgaggttacaggcacgaggcagcgctgcatgggcttcacgatgcatgttggctg
tgaaatgtaggcatcagttctgtgtatctgatctattataagcaattactctccatttcc
tagttatgtggtactattgtaataactaatatgttagatattttcttcagtaatagctat
ggctttccccagtagctaaataattacagtttttagctataatcttctcagaatatctta
gcttttttttttttttctctgagacggagtctagctttgtcgcccaagctggagtgcagt
ggtgtgatcttggctcacggcaacctctgcttcccaggttcatgcaattttcctgcctca
gcctcccgagtagctgggattacaggcacccaccaccacgcccagctgatttttgcattt
ttagtagagatggggtttcaccatgttggtcaggctggtctcgaagtgatctgccctcga
gtgatttgcccgccgtggcctcccaaagggattacaggcacaaatcactacacccggcct
atcctagcatttaaatgcttaatggatccagcctacatgagctggatcttagatttgtct
cttggtagttttgtgacccttggacgagttattttaaccttttgttgtctcagtttcttt
gtctgaaaagtacgaccataagaattagtatctgattcatagtattgtttggagaacaga
taagttaatacgtataaaatgcttagaatagtggttagcatatagtaagtgctgaatgaa
tgttagctattttttattactgttattattatctttatcattttccttttttttttcttt
tgagacacaatctcacgatctttcccaggctggaatgcagtggtatgatcacagctcgct
gcagcctcaaacttctggcctcaagcaatccttctgcctctgcctcccatactgctggca
ttacaggcatgagccaccacacctggccatcatttacctttttgattgacgttttctgac
atcttgcccaaggcatttttgtggacattacctttccttccatcaatgcaccctgtcgtg
ttaaagaacacaagatatctaagtgtaaatgtctgaaactcacacggctttcatccgcaa
ctgccccaaaattcaaaataggagagagtcttaggaatgtctgaagatttatgactgttt
tttaaaagagggggaaaattgtcaccagcaaaggatagccttgagtttctttttctgacc
ctgccatagccttgggagcagctgcaaggggacttggttgtcataaagaggccatgcaag
gatgctacagacagctgagtcgcaaatgcgcctgagccgctgatcttcgtggggtcctgt
aataaacactcagttgtccaacgaaaggagtctgactcccacagggaagttgccaagaaa
aattgatcagccgatggattttgctttttgtaaactctggcacttagacatttcccttta
acagcgtttgagatgactttgctagggcggcagctggaatgggaatcagatggtgtcgga
atggagcggggtcaagagcctgcagagcccatggagacaaaagacctagcttccagttcc
agccactcacaggctgttgctggcaccttctctcagtctcagtttcctcacctggaaatg
aatggagaagaatagtatctgcctcctgagtcgatttgaaaggctaaatgagataatgta
catgtagaaggatgtcagtgtttaaccggggttgccatggaaacaacaatgtccctgtgg
tggggagttgcttctttcctttgtctgctgctttggaatgagtgggtcgctgcctctctc
ctctctttttttggtggctaatgacttgggatttggttttaacagattataagacctagt
gacaatagggaatacaaccttgggattgaggatgaagacagtgtgtaaggggggttccct
ggggatggagggtggggtgaaatagtgtggagaagaagaacaattctggggtcaggatgc
ccagggtggaattctgggggccagcccctggcagtggggcagtgccagctgagatcatgg
agaggaggatcagagggagggctgcgatttcatcttacactgttacctactctacaccat
cagaataaactgactttccaatggacagagatgcccagcaggcctgcagaactggttctg
ctccatccttgggtgcctggtccatggttagcttgaagggacccttggatgctaaatgaa
gtggtaggatgagcttccaccctgggcaaggccaaaggctgggctgagccaaggaaggac
tgaacgtgactgctgagtgggggcagtggtctgtgagcactactgctataggctgaatgt
ttttcttcccccaaaattcatatgttgaaatcctaacccccaagcaatggcattagaagg
tggggcctttgagacatgatcagtcatgaggatgcagctgtcatgaatgggattagtgcc
cttataaaagagacccagagagcttccttcctccttttccatgtgaggagacagtaagaa
gcctccatctgtgaaccaggaagtgagccctcacctgacattgaatttgctggcaacttg
acctaggacttcccagcttccagaactgtgagggataaatgactgttgtttataagccac
ccagtctatggcaatttgttataGCAACTTGAACGGACTGAGG
Primer
(+)AACTGACCCTCCTCTCCTCT
(+)cctcagtccgttcaagttgc


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