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Human element [ hs2643 ]


Position: chr5:153,901,609-153,905,131 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HAND1 - MIR3141

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAGCTAAGCAGTACCGTGGccccccactcttccagtgctgctggcctatggcttgctta
tcaggggtggcacccccactaatgcagcacggggtgtccagggactgagatcggctctcg
agttcccctgtggccacaaactgtcctctggacagttgacttgcttggcggtgcctcatt
ttctttatctgtaaaacgggccaaaaccacttttgtcacagagtgacatccttgcaacag
ccatactgctgtttaaaatcttccatctgcttctccttcctgcagggcaggtgtaaagaa
ggcctggggtgacccagcatcctgacttggagaagatcctatgggggaagagggccatgg
agtggtcatcgcagataaggggccctttggtgctttctgtcccatgtgcgctaataattc
ttcagccacagacagcatcttgcgacatccaaagtactctcatatccatgactttatgtg
accctcacattctaccttgattggtgggaaactgaggctggtaaaaggagatgtgacttg
cccaagatcacacatccagccagcagccaagtcaagctgtagagtgcagtggataagagg
atggtatcaggccatcctggctctgctgtgcttaagccgtgtggccttaggcatgtcatt
tcacctccctgagcctcggcttcttcatttatcagtaggaatagtgcagaattgttctga
gggttaaataaaacaaacagagtgacatactgggtgccatcctggttttggtaacattca
gagccaaaacacacctttcttggttctaagtgactatatctggggagtggggacttgtct
ttttttcctcctacatcttgcatctcgctggtatgatttccatgtcccatcacatcagtc
tcttccccaggtcttccaggctccactgtcagcactaagaagtcagggattgggtgtggc
ttgctccccgctgtaagcccagcacatagcacagcaccttacactgagtgagaataatgg
ctcatattttaagtgctcgctgtgtgccactcctgtgctaagcactttctctgcctcttt
tcatttaatcctcacaattctacaatgtaggaggtatgattctcatccccatcacagcag
tgatggaactggtatcagaaagggaaagcaaccagctcagcagagccaggcatgtctgtg
cgactccaacactcaaccgcacggcaggctcagcagctgttctctgcttataaagcacat
ggcgcctggcacattggtcaccctcaatccatggcattggatctttgtcacctgactgtc
atcatcccttctgactctcagtccctcctctgaacaacagctgtgtgttggccccattca
tgtcccaccaatgcccagtcctttagggggctccccagctagccaaggtgaccccatgct
aacatttcccaagctctttcctcaaattttatctccatcatcaatgaccaactcctctgt
gtcagaggcaaacagctcccacccgtatttatttcaccccagctttgtctatttatagga
agctggcttgtcctgacgctgtttctgttaacaaggcaggcatctcagccaactgggcag
aaaagcagcagaaaccttcagtcctgcccataaaggccccagaaatgtctctgcctccag
aggtttttgagaaactgctgcaaggggaattatgagtgtaaacttgccccctccctctgc
ccgccccccagccctctcatctggacaataacagctcccatctcatctctgagaaaccat
tcccgaaggttccagctgagtgcaggattaggcctcagggtggcaattagctgataaggc
gatgacttcacccagagcagagagagcctggctagctggagcctgtccctgcaggacacc
ctgccctgggcctctctccctggacttagagacaggaaccctggcccaaggcttggggaa
gtctcttcccctctctggacctctgattgcccctgtgtgaaatggagcatgttctgacct
tcacaggcttgtgggaagctccagtaaaataagaaataagatcttgctcagaaagaatcc
ctggcagcagtgcattgctgaccatagacaaccatagaactggagccttttctggaatat
tcctgaaggaacaaagaaaagaggcactggccagggaatcaggtggacctgagtttctga
gcacaggccctgtgttcaccagctgtgtgctctcaagcaggctgcctccctttcctctct
gtaaaatgggacagtgtttgtgccttgtcttcctcgcacatggttttgagatgcagagat
aactgaggaaggagagctgagcggataagatcacaggtttcagagcatgtgggcctggct
tcgagtgcctgtttgaccccttactaactgtgtgcctttatgttgatggcttgtataaga
cctcggttcttgtcttcttagtttaaaagaatttaaacaagagacacccagcaaaggagg
tgaatcatagagtaatttctcgaaaaataaaaagatattttgcaggtggatcacttgaga
tcgggaggtcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatcaaa
aattagctggttgtgatggcacgtgccagctcctcaggaggctgaggcagaagaattgct
taaacccgggaagtggaggttgcagtaagccaagatcatgccactacactgcaggctggg
cgacagagcaaaactctgtctaaaaaaaaaaagcagattccttaaaaatgacctgggaga
taaagtgggatcttgcccctgcctgccactgggaccccagctcccaacccctctcccctt
gccacactggttttcttctctgtctgaaaaaagagaaaagaaaaaaagaaaaagaatatt
ttgaaaggtcagggtgggctgctcacgaggatgagtcagccaagactggcactagggaag
ctccctttacaggaatcttccagcattattcataaggaggtaggaagaggtgttactatt
atagtaagcatgttctgggtggtctctgggtgcacatgctcagtagccacacatactttt
tcatacgtagcctgtacagttcattagcatcttaaatctccacccaggggtgtgttttta
ctattataatgagcaaagggtcagtctgaggacaggtaaaatcaaaatgtgcatgctgtc
tggaggagaaagtccctactgaatatagcttcagtagcccagctaatttttgtattttta
gtagagacagggattcatcatgttgttcaggatggtcttgatctcttgacctcgtgatcc
gcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgctcccagctgaa
gaaaggtgtctttctatccacggccctctgccccttctttgcctaatgttgaggtggaat
gttggtcatgaaggcagcttaccAGCTGTGTGATCCTGGTCAA
Primer
(+)AGAGCTAAGCAGTACCGTGG
(+)ttgaccaggatcacacagct


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