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Human element [ hs2642 ]


Position: chr4:174,576,731-174,579,214 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HAND2-AS1 - FBXO8

Timepoints:
e12.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GACCGGGTCTTTCTCTGTCAcccaggctggagtgcagtggtgctatcatagctcactgca
acctcgaatttctgagctcaagagatcttccagccttagcctcctgagtagttggaacta
caggcatgcagcaccaggcttggctaattttttatctgttgaaaagaggattctccttct
gttgcccaggctggtctttagctcctgggctcaagtgaccccctgcctctgcctccaaaa
gtgctgggtttacaggagtgagcccctgagccctgccaaaagtttgtatttttaatagaa
ggtcctactactattacagtttgaattgtttgatttcaaggaatgcatatttgaatagat
aattaatgccacattaactctcacttcccatggatgttaaatcaatgttgacttggacca
aagataccttagataggctggcatggagaatgatgtgaaaggctaaggtaagaaggaaga
tcaaaggtggactaggaattatccctttacaggctatacttacttcagaatgaaatagat
gtattcatataggtgtaggacttgaatttgaacctacactgagttaatatgaccagtttt
gtccagcagttgattaagatatcaaggaaagaaaaaaaacagttaaaaatcattgcatgt
caatgaagaaatatgtattagatgaaatcctctgatttaacattattacaaatatgagtt
tggatagatcactggatattcttaactcattttatacgtaggccctatcctggatgctaa
cagtaccacagtgactaggatgaagtctctgcatcttaagcagcctgtagtctagtgaaa
tcatgagcagcgcccaaaatggaaaacccatcaagtggcttttacttttcgattgttctg
gccttcaattataatgtggagaattatggtgtggtcttagctttgcctctggtcttagat
ttttgttgacttcatctatttatccatttattcatccacccactcaatattttttggtag
cctaccatgtgctagatcctgtactgagtgcttcagatatcctcatggagcctgctatct
tgtctttcaaacaaaccaacacagatttaggaacacattagtaatccttgcagtccagga
tttgttaaagttgaattatgggattattgagtgtcaaaaccaaccatatatggaagttaa
attatggcagattacagtgtttgaggactgcttgctgacaacatatcactacagttatat
gaaaacaggagataatatgaagacagaacatctatactatgtttaaagatttagttggca
agtgttgctcttaataatactcatgtattcaaattcagcccaatgagtttttgtttcctc
ctggtcatttgaataatccctcagataaagtcttttacattatggaaagatgtccggttc
cacatgaccactgcctatctcactctatcatttcttgggattctcagctgcacttcatca
tatatcatcaccttttagcctgttctggtcactctatctcacacttcatcgcttcttgca
ttctttgtgagctctcaactctgtcacggaatctatctctgttgtacacgaactcattat
ttccaaaccaaatatacagtaattaggccttattggtatctagcacagttctttttagtt
gattaaaacatgaactattcagttcactatcaaaaaggaataatttctgtgataaaatgt
ggacaagaaggtattgcttgctattacatagtttctaggctttattcctccttatgttga
tctgtaaacttgagtaggcaacttattagtaggcacctttgttacattaaactgaaagga
ataaagataaatgctgactgccctgttgaggtgtcaccattatgagttggtcatgtagct
tttggtgatgttaacttaggaatgttattacattcagtacatttcaaagtagtaaatatc
atttttttcattgtctttaccctaaacagcgaaatcatttcctctattctgattgaaaaa
tccaagctgaatgtttgtgaactaatctggattatctaaaagaaaatctccatgtgagat
taaaagtactatttttatatgattggttattttagtagatttttctgagtgaattattct
ttcaggttttctaatgcaaagttgtcaaagtgtattttattaaataatggaaatggtcat
agcaagtgtaatgttgttattcacaataattatactttatgcatttagattctcacattt
tgctacatgtaatttcccaccctttgctaatataatgatctcaaattacccagatagatt
ttccatcactccgtgtccactagaatcagaggccaaacatttaaaaattcaccatcccca
caaggttactgcagtcctttttgcatgcctttgagttaaaatgtgatttgacagagttta
ggggAGTCTGGCCAGGAATGTCAA
Primer
(+)gaccgggtctttctctgtca
(+)TTGACATTCCTGGCCAGACT


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