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Human element [ hs2592 ]


Position: chr4:124,703,587-124,708,683 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC01091(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCAGTGCAGTGGACCAAGAccaataacatggtgtatgataagatatttgcttttgggtg
gggaagatttgcttaaagcggagaaggtttcaggatgacaaaacaaattttcccgcaagt
ttggtatcaagcttttgttttgttatacttgattatctactttggctgaataatccaaac
atacattccaatccaatttagtccctgcttagagtggctcttcttatttgtccaagagtt
tcagaactattttttttctacttcttctgagcattcagcctttatgtatttcaaggacaa
cagactccagagatttgggttttattcatgacttcttcaagaagtgggccatgctatttc
agtcatttttaattggggggcaagttggatgctgaatatttcaaaggagaaaataaaata
acctagtagatatgtttcctggcatagatgatagaaaagtcacttagactcctgtatgcc
atagtttaatcaaaatgtatccagttcactgtctgtccttccattaatatcacaacttaa
tgtacaagtctttagcatatcctatactttgcctaaaagaaaaatgtatttaacatctca
gtgaatatacttatttaatgcagctcatagattcatatgtttgacaaagatagtgagaaa
ttttaggtaaaaatgattttcacaaaagagaattgcattatatgttaaatttataaaact
atttccaagaatcatggaatcataaaagtgagacaacaaactcaattcttttgcgtaaat
tcttttggcatttgtttaatgattttctcaatcctcctgttagttatatgaatcacagga
ttcccaatgatttgataaatgtgagtatgaagtttaacatacttagactggaaaaagcta
tccaacaagtgagtcacaagtgagaaatacccaacacaaatgtgttatttcacctaaatt
ctgattaataaaaaaataaatgtgtgtttaatgtttttttttctcaattattttaagaat
ccataacacaccaatcgaactttaaagttgaacagaaagttcctggaaatgacctggtct
aagctcttagctgtcagatgagaaacacaggcctggagagttggcctgatgcatgcttat
ttatctatgcaaggacctcagccaatgaggtcccagatgggccctgtgaccacctaccat
gagaacttgtaaccattaccataaccatcaccatttgtacacttgcatactagccagaca
gtatactagtgttttatttaattccttcaataattcagtgaggtgcttaacgttaacatc
cctgtttaacaggaaaaaaaaagaggggtaaagtcacttattcaactagtcttaaaggaa
ctttgaacccagtttttcctgacttcaaaacccaaactcttttcaactattctgccatta
aataatggtactgtggtgggcttattgccaagtatggagggtttagagcaagtgcatgac
aataccaaagcagagttcttttagaataatcaaatgctgctaactgggtgtgtgattctg
agggagacagcctattttcatgtctgatagagttcctttgaatggagaatatggaagatc
ctgtactttattaggtggccctctctactttaattatcctgatgcctgtcctctgagtct
ttctcattctcctctcttgtcttaatcctgatttaaaaggaggataagaaacataagcag
atgaataaaaatagcagcccaggaagctttgcattgattcattctacaaatagttgttaa
ataaatacatgtgccagacactattcctgatcttttaaaacttgtgttcttgtgtgtgtg
tgtgtgtgtgtatgtgtatgtgtgtgtgatgcacataaataaactatttgatcatcaata
acttttcacagtagtatcttctcacactagtgaacatttttggggtagttttggtacagg
catttaggttgatttttttttccttacaaagttcctggtaagtttggaggctgggagttt
gattatagaaggtattattagtgcctgtctcttaattgatcagaggttttgctatactaa
aatgaccgttcttaaaaaagtgtttccgaagatctctcaagctttataaaccttcatttt
tgtacatgttgtaactgtttgctgaaaaattcattctgtaggtggctgaaacctccaggg
ggctatgcactgggtgagagaagtgaaataggatgtggtaggagagtaaatggcaaaaca
agggagaggaaaaaacatcctagttttcttctgcctggaaataaacatgcaggaagcttt
aatatcagtagcagctgtagattttttttaagttaaaagttttggagatagttggaaaaa
caaaaacaaaaacaaaccacatctggaaacatttcaagcaaaggcaatgtaaaaaatgtg
ttggatgatatattaggagaagagctggttgcaagtaacactaaaatttaaaatgagatc
acttatttctctcttattttatgcctggaggaaagaaatacaatgtaagtgatcaaggct
ttgtggagcaaagcctcaaggatctaggtgcctcattgcttggagttttactacataagg
cctctatttttaagataacgtcaaggtccaagaaggctgcttcagctctagccatcacat
cactttccaggtggcaggaagaagaaagatgatgagcctactctctccctttaaggttat
ttggcataggttgcatgtattacttcaatgtgcatccagaatttagacaaatagtcacaa
ctaggtgcaaaatggctaggaaataagagtatttcaaatacccaactaaagttcagggat
tctattactatagaaaatgaaaaaataattagtgacaactattacagtttctgccacgga
taactttcacttttctctctgtcccaagtcttacaagtctataattttaaatccagtctg
agcatgttttcaatgaaacctattctttccaatttgtttctgagtagcaaaaacactttc
taatgccctgagacacattgcaggtgaagaatggaattaggaaaaaaaggaatggcaaat
ggattttcaacttgctctgggcatcactaaaattccacagaaacagtagcatcatttcag
catgaccagttcccctcattcacaatgactttaatgttgcaaaacaattcagattcctca
ggcacctggcagctgcgtgcctgactcagtctttcaaattgagacacagttgggacctca
actcctgctgcctgacctgcagagcattttcctctccgtagttttaggaggtgtcatcag
cccagtaggggaaactcttggcaaacccaaggcgttttccttccagaaactcaatgatcc
tgcctctgtgaaagggccaaatttgtcagtgggaaaagaattttaagaagtatcatgaaa
taaactgtgttgccatgctctgaatattgacccttagtaataaaaggttcttacattttc
aaacatggcgttggagtcatctctttaaataattagcaagaagggagacaagatgcagga
gttcacttggctctttgaaaaggaaaactttaaagtcaggtacgttggaaaaaagtgaat
caaaacataggtacctataatctttcatagtaaaatattggggttattttttctaagatc
ctacatgtgaacaaaagaggagtgccacagtcttgtatgtgcctatatagatgatattta
ttcttaggcatttttcaagttaaatatttattactactagagagttgccctgttcttcaa
ttattttttttcttggtctcttccctcacacaatttaaaaatgatccaaatgttccactc
actgagtgtgggaagacatagaacagaaggaggggaagaatgacagaaactcagtgaagg
ccttcagaaccgtttgccaagaaacgttttggagaggttaatgatacttgaacactaatg
ctcttcagttgcttttaccttgaagacatccagctactgtgtgtagtttaaactacctat
ctacaagcagcaattctaattatcattgcctcttcttatacccagaaatatttggctgga
tcaagttagttctcagatgttggtcagttttctgagttttaaaaagcgttactcattaca
acatttggagcctccattctttgtcctttacggacatggtaatatcagtttccaaattca
gaactgtgacagcattccggtggagtatccaaacttgtttttatagtcttggacagagaa
gaaaagaaaacatactggataaagtatgaggagtttttccttctgctaaactccccccac
ctcccgaactcaaccagaaagaaacaaaattaaaaacaaaggaaccagaaaataaatgtg
tgtctgggaatctgatggattagtttcctcctaatatacctgcttcagtaaatgcttgca
ggagaaatgtttgcctgttcctcaaatgtcatagctttcctttggtctctctgggtggat
ccaatttctcggcagtgtgatgtattccttgttgtttccagtattttcaatgaacaggaa
tcatctggtatataatccatggctgggctgaaggctgagtgcagctggccacagctgtgc
tagagtagcctgagaagagaactgctcatataaggttgtttaagaaggtatttgcaagtg
gagcagacaatgggctcggtgccaatctcagtcagtgacatgggttaaccttctgtaggc
attatgtggtcattggtggccacagaagtggacttgaaaagaaagtggagtgttcactac
ccgatggcctgtttcacagctgagtttcaacctctttgtggccagatgagcctaatatag
taaaaactttttcattcattctcgccttttaaagcttttcactacaaatttgtctttgga
gaagtcttagcagtgacaccacttttccattaatattggagtgtatatttacatggactc
tttaaataatttgtgtctgattgattctgaaaagcatGCAATGTCTTTTGTGTGGGA
Primer
(+)GTCAGTGCAGTGGACCAAGA
(+)TCCCACACAAAAGACATTGC


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