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Human element [ hs2591 ]


Position: chr8:119,035,297-119,039,719 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: EXT1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCAAGGCAAGGTCCCAATAtttcctggaaaataaccaattgtaagtattcaaaatgttt
cataaatgggcaaaatagtttcatcacttaggatgaaatagaataaagtttacttttgta
ttatcaggaaaaaggaagtttgctgggaataaggtaaacaaggagaaattattcacttaa
gacagattaagctattttcaatcacttcaaatacaataacattactaggatataaacaat
gggttaattataaataactcaggaattgttattaagaaagaccattcctgactattggca
attagcatggtgttagcacatctaaaacaatgggtaatagcaaatacttcttcctggctt
tggctaagaagaaagctgtcagcagaaggggagctttaaaataggaatggcttcactctc
tgagccattttaagtgcaagaagtggaccaatagaaatataaactgacagccttcctagc
aggctctcaggctactaggaaaatgtagtcatcataaactaaaccctcagccttcaaaaa
taaatgaggaccacgtccagatgcagagctgtacgtagaaattaatctttctgtccttgc
tccaaactctatgttttctttttttagacacaaagattaacactaaagaggtagatgaag
aaactaaaaagggaaaaagcaatagtaaatttgaaagaaatagcagctgcaacagcaggt
aatacatatccccagcagcttattagaagcaagacttgagcacagatacagagccgctca
ttaacgataatgccagttccagaattagcaatgccatttcttcctttcttcctgcatatt
tgttcaccctcacattgtggctccacactgcatgtgaagttcctaccttgtgccacatgc
tgggaatacaaagatgtgggaccctaatcttgccttcagaggactgtaagtctagagtgg
acattgctcactttctccttccccctatctcccatccaccacttattatctcctggatgc
cccattaagccatgaaaatgtgggagaaatcttagaagaaaaacagggactacttatgtt
tcaaaaaataaaccacggtagaaacaaaagagatcaaggaaggtgagaaaatgtaaaccc
tgtaagctaatacccttaataactgccaagattttccttgacggtgcctatgatcagcct
ttctagaataactgacttcttagaaaatggttagaaacaacaaaaagaaaatacctaagg
tctacagagaaaacatgtgtttggatactaaaacacaactgttttccaaaaggtagcatt
tcctccctacccaaaggaagtttctacatcatacattcattcatccagccagccagccat
ttgtttttcattcattcaactatgatctacggagatcctattatattccaggtaatgcac
agactctagggataaaacagctttaaaaaaaagaaaaaaaaaaacagcttcatttctgtc
ttcttggaacttgcagttcagtagaggcagaaagatgctatttaaataatcacacaaata
tggaacttacaaactgtgctaaatgccctaaatgaacagtcaagaaactacagaatgtaa
cagagtgacagctaatataagaaacaagggaaggcttgtttgaggaattaacagaagaac
aggaagtgggcctagaggtctgagaaagaggagaaaagtgctggatgaggctggagagtt
ggagggaaatcagatcacaggaggcatgatccttgtagagcatgataaaatggtcatctt
tcatccaactagcagcagtgagatattaaatattgatgtgttttaaacactagagtgaaa
gttcagaattatgatttcaaactatatcttgatattcgcatgtctgtgtttatatgtgtg
tttctatgtacgtgtatgtatgaatccttatctatgcatgaagtatatctagaaagagac
aaaaggcactgcagatagtggttgcttctgaggaaagaaactgagaaaggacaagctagg
agaagcaggaattccctgtcactgtactgggggtcagagtgggaagggacaggagtcatt
tgctataagaagttttctctgacctagaaagagacacaggactaaggtaggtaaagaaac
aaaaacaaaactctacagatgaaggaaccagatccactcctggctcaccgctgtgggctt
caccatgaggaggagaactccaaagtacaggagcagacttctaagttttgacctcagcca
aagacctggagagccaacattccagccaaagaatgttggctcatggaataaaaacaaaaa
caaaacaaaccgcactaggtcaagataacaaaatgagagaagagcttgctattattatct
attcatgccccaccggatataccttgaaagacagctgaagggaaagcttagaaactttct
ccaaagggctactttcgaaagcttttatcatctggactaaaaaaggcccaaacaagcaaa
agaaaagccccagtaaatgcaggcacaagactgtaaaaggagagtgaggagactgacttg
ccaggccagcaagtagctgagaggctaaatgatggggctgtgaacctccggcaaagcggt
tttaggcacaggagaaaaaaatgtgatgaaggagtcttgtttcctttttttctcttccat
aattttttttttcaaaaataccacttcaatcaaagttttgacaattatgaaacatgtcag
ctgatagtgagaattcatcaaatgtgccataaatgacaagaaatgagaacccgaatcctg
aaattggatgggcttcaaaagtttctgacaatcactgccataaatcatccaggcatatca
atctctggctggaggagggtttgcaagaggtaaaaatgcagacaaaggctcacgcagaaa
aggactgccacactctggatgggaaaagagtgtactctattgtgagggctgtttcttcag
ttacagaggttggcgaccagttacccagcggtcaccataatgaaaacacacagatgtttc
cacctgtacagcaagagacacaagacgcaatggcaagacctacaatcttcttaggaacca
cacggcacctactgagccagtcatctagctcacaaataatgacatcactcctctgtccac
aatgtaagggctggctaaggtgagggctaatggggaaaacagcacacatttatttcatta
gattcccaagatgaaaggctcaggttattattttttatttatgcaaagtttgtggcatgc
tgttgcttgataaaaaggtaacaatctctgggctctttttcctttcaatttctctacttc
ttttatcttttaatgcaattaaacataatgaacctgcctcttggttataggtcaatataa
actgtgaaattcctaaaagggcaacacaaacttttgagatttcgccctgagatagcaatc
aatatattcatcatcaacatctggggtatgacctacgctaagcctctggagaaaaaaaaa
atctcttgaagagtagtactaagttgattttcatttggttcccagttctgtcacaaatgc
tgctatagtcaaatcaagccacttgatggttttttggttcttttatctttggggggaggg
aacagcattagctactacaaacaaccatcagtcactgattcaccggactgcctgggccat
gtccagctccttcaacaatccattagccacacattctggacagtgccttttccaagcaaa
gatggtccataagatggtccatttggaaacacaaaacagagtcttctcaggcatcagatt
gtccaaggtaatgaccccatgcacagctataggaatctgagttaccaaaaatggtacttc
cagctgggctcagtggcatgtgcctgtagtctcagttactttggagcctgaggcaggagg
attgcctgagcctaggagtttgagcccagcctgggcaacacagtgagaccccatccccaa
aaagaaaggtagttctagccccagaaaatgggtcataaactgactttctgtgataattta
ctttttagagaaattgcaagcactactcagggttagtgttttgaaagaaactcaagtaca
cagaatagttttacaatgatatatctatttgtatcatcagaaaattaagaaaggacaaac
agacttccaggttcctgtttatagaggggttttcgagtttccaaatcagtttctttcaca
cacacacacacacacacacacacacacacacacacacaatcgcatttaatgctatcaaca
gctttacaagaataactacattctacaagggtggaagaaactgaggctcaatgaatttaa
cagatctggctcaagggcattccCCTAAATGGCAGAGCCAGAC
Primer
(+)TTCAAGGCAAGGTCCCAATA
(+)GTCTGGCTCTGCCATTTAGG


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